Protein Protein Interaction Python Packages

arpeggia

Calculation of interatomic interactions in molecular structures

deeppurpose

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

spada

⚔️ Find splicing-led, functional changes of the proteome.

duello

Osmotic second virial coefficient (𝐵₂) and dissociation constant (𝐾𝑑) for two rigid macromolecules

nease

A network-based approach for exon set enrichment

protify

Low code molecular property prediction

contact-map

Contact map analysis for biomolecules; based on MDTraj

mmtfpyspark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

pedl

Search the biomedical literature for protein interactions and protein associations

deeprank

Rank Protein-Protein Interactions using Deep Learning

ppi-origami

Tools for processing and analysing PPI datasets

ymap

An automated method to map yeast variants to protein modifications and functional regions

ppi-net-builder

Protein-Protein Interaction (PPI) network construction and analysis using STRING-db (https://string-db.org/) in Python.

mdinteractions

A python package for the distance-based analysis of intra- and inter-protein interactions

splitpea

Splitpea: method for calculating network rewiring changes due to splicing

acrcasppi-ml

Prediction of protein-protein interaction between anti-crispr protein (acr) and CRISPR-associated (cas) protein using machine learning algorithm

ppaxe

Text mining tool to retrieve protein-protein interactions from the scientific literature.

intrepppid

Incorporating Triplet Error for Predicting PPIs using Deep Learning

pyscorpion

Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks

braid-mrf

Predict protein complexes from high-throughput data

farseernmr

A software suite for automatic treatment, analysis and plotting of large and multivariable datasets of bioNMR peaklists.