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Proteins Python Packages

Python packages with the GitHub topic proteins. Sorted by relevance, with stars and monthly downloads.
Acellera
moleculekit

MoleculeKit: Your favorite molecule manipulation kit

27K 236 39
williamgilpin
pypdb

A Python API for the RCSB Protein Data Bank (PDB)

5K 335 76
BIONF
greedyfas

FAS - Tool for Feature Architecture Similarity calculation

3K 6 1
tlambert03
fpbase

Python wrapper for FPBase.org GraphQL API.

3K 5 0
haddocking
haddock3

Official repo of the modular BioExcel version of HADDOCK

1K 237 58
lucidrains
progen-transformer

Implementation and replication of ProGen, Language Modeling for Protein Generation, in Jax

1K 114 17
menicgiulia
cpiextract

CPIExtract is a software package to collect and harmonize small molecule and protein interactions with support for stereoisomer matching.

1K 11 2
bradyajohnston
molecularnodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

1K 1K 121
szczurek-lab
seqme

Metrics for evaluating biological sequence design

842 14 1
bio2bel
bio2bel-kegg

A Bio2BEL package for integrating pathway-related information from KEGG in BEL

805 13 3
raghavagps
afpropred

A tool to predict anti-freezing proteins

672 2 0
saezlab
omnipath-utils

Prior-knowledge processing utilities Python package, database and web API

605 0 0
BioinfoMachineLearning
dips-plus

The Enhanced Database of Interacting Protein Structures for Interface Prediction

541 55 9
kamerlinlab
kif

KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.

499 34 4
BioinfoMachineLearning
deepinteract

A geometric deep learning pipeline for predicting protein interface contacts.

491 66 12
sacdallago
biotrainer

Biological prediction models made simple.

463 50 11
Synthyra
protify

Low code molecular property prediction

447 11 7
Old-Shatterhand
protviewer

A tool to view activity pattern in protein structures.

427 0 0
TurtleTools
geometricus

Fast, structure-based, alignment-free protein embedding

385 41 12
tekpinar
correlationplus

A Python package to calculate, visualize and analyze correlation maps of proteins.

321 44 8
ArnaudBelcour
bigecyhmm

Predict enzymatic impact on biogeochemical cycles from proteomes.

257 5 0
bio2bel
bio2bel-interpro

A Bio2BEL package for converting InterPro to BEL

218 0 0
truemagic-coder
folding

AlphaFold2 protein predictions

195 0 0
jmborr
idpflex

Analysis of intrinsically disordered proteins by comparing MD simulations to Small Angle Scattering experiments

189 3 4
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