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Python Tools Packages

Python packages with the GitHub topic python-tools. Sorted by relevance, with stars and monthly downloads.
biobakery
metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

5K 404 91
biobakery
phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

3K 166 36
perf-pip
pepip

🚀 Fast, space-efficient package manager for Python

3K 5 2
biobakery
halla

HAllA: Hierarchical All-against All Association Testing

2K 21 2
rotsl
envguard-tool

macOS-first Python environment orchestration framework — preflight validation, dependency resolution, lock files, and safe managed execution.

535 0 0
biobakery
metawibele

MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome

483 23 3
mateofumis
dumpdork

A powerful command-line tool for Google dorking, enabling users to uncover hidden information and vulnerabilities with advanced search queries.

455 34 6
lykhvar
ppcli

Dynamic CLI tool to manage project-specific commands using pyproject.toml configuration

403 0 0
zbowling
depwise

A fast, comprehensive dependency analyzer for Python that detects unused, missing, and optional dependencies.

371 2 0
Ailln
torbjorn

🔨提供一些实用的 Python 装饰器

299 8 0
huaiyu-yang
pyre-tools

通过加载脚本或项目地址,快速导出依赖文件,支持txt和toml格式

297 1 0
eriknyquist
duckargs

Code generation tool, creates python / C programs that parse command line arguments. Say bye to starting each project by reading "argparse" / "geptopt.h" docs.

292 122 4
VAZlabs
cyber-find

Advanced OSINT tool for searching users across 200+ platforms

253 60 13
Matricess
depcycle

Command-line tool to visualize Python project dependencies.

246 17 0
biobakery
parathaa

Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assignments for Amplicons (Parathaa)

196 3 2
biobakery
fugassem

FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes

185 21 2
diyarbagis
flasknetworkbackup

A free open-source Flask app for backup on switches,routers and firewalls.

185 3 0
codeswhite
probat

Battery life saver and reminder

183 0 0
RicoVZ
socks5man

Socks5man is a Socks5 management tool and Python library

175 12 7
thoth2357
poetryize

💻 Poetryize: A Typer-based CLI tool that converts requirements.txt to pyproject.toml, streamlining Python dependency management with Poetry. Enhances project maintainability through modern tooling integration.

146 17 3
biobakery
baqlava

Bioinformatic Application for Quantification and LAbeling of VirAl taxonomy

123 14 2
shuakami
pyunstuck

A powerful diagnostic tool for analyzing unresponsive Python programs, focusing on deadlocks and blocking issues.

113 0 0
agusmakmun
changewords

Simply python tool to change or replace the text string in the files. This tool pretty nice for programmers if somehow they want to replace/change their codes for many files, eg: function, class, variable, etc for recursive files or not.

112 2 0
biobakery
graphlan

High-quality circular representations of taxonomic and phylogenetic trees

110 108 30
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