Quality Control Python Packages

spotsweeper

Spatially-aware quality control for spatial transcriptomics

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

crowd-kit

Control the quality of your labeled data with the Python tools you already know.

nireports

The NiPreps' Reporting and Visualization system - report templates and "reportlets"

sequali

Fast sequencing data quality metrics

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

bombcell

Automated quality control, curation and neuron classification of spike-sorted electrophysiology data. Available in MATLAB and in Python.

digitalcellsorter

Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:

rainfallqc

Quality control methods for rainfall data, based on polars

visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

titanlib

A quality control toolbox

potato-head

🥔 Quality control for your potato heads (LLMs)

pytolemaic

Toolbox for analysis of model's quality and model's description. For further details see

anomavision

Optimized PaDim based on Anodet

aibolit

A Static Analyzer for Java Powered by Machine Learning: Identifies Anti-Patterns Begging for Refactoring

covsnap

Coverage inspector for targeted sequencing QC (hg38)

pymasc

Python implementation to calc mappability-sensitive cross-correlation for fragment length estimation and quality control for ChIP-Seq.

mhkit

Marine and Hydrokinetic Toolkit

process-improvement

A Python package for performing calculations and generating figures that facilitate an understanding of process variation.

marine-qc

Marine Quality Control toolbox

alphaviz

A interactive Dashboard to explore mass spectrometry data.

meteora

Pythonic interface to access data from meteorological stations

npyc

National Phenome Centre toolbox

mrdataset

MRdataset : unified interface to various neuroimaging dataset formats