Reproducible Research Python Packages

pynwb

A Python API for working with Neurodata stored in the NWB Format

pystow

👜 Easily pick a place to store data for your Python code.

itk-io

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-registration

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-filtering

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-core

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-numerics

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-segmentation

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

sacred

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

sionna-rt

Sionna RT: The Ray Tracing Package of Sionna

sionna

Sionna: An Open-Source Library for Research on Communication Systems

itkwidgets

An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.

scitrack

library aimed at scientists who want a simple tool to help log research computations

scitex-linter

AST-based Python linter enforcing SciTeX reproducible research patterns

agi-env

Open-source platform for reproducible AI/ML workflows, from local experimentation to distributed workers and long-lived services.

agi-node

Open-source platform for reproducible AI/ML workflows, from local experimentation to distributed workers and long-lived services.

agi-cluster

Open-source platform for reproducible AI/ML workflows, from local experimentation to distributed workers and long-lived services.

agi-core

Open-source platform for reproducible AI/ML workflows, from local experimentation to distributed workers and long-lived services.

agilab

Open-source platform for reproducible AI/ML workflows, from local experimentation to distributed workers and long-lived services.

pytask

pytask is a workflow management system that facilitates reproducible data analyses.

calkit-python

Research project management and automation.

pipefunc

Lightweight fast function pipeline (DAG) creation in pure Python for scientific (HPC) workflows 🕸️🧪

umls-downloader

Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically