Rna Python Packages

ga4gh

A reference implementation of the GA4GH API

helical

A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.

seqfold

nucleic acid folding

graphein

Protein Graph Library

rnaglib

Toolkit for structure-based deep learning on RNA.

metagene

Metagene Profiling Analysis and Visualization

rna-tools

🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

pyaragorn

Cython bindings and Python interface to ARAGORN, a tRNA and mtRNA detection software.

chilife

Python package for site-directed spin labeling of proteins

deeprm

Deep learning for RNA Modification

pipeclip

Optimized version of PIPE-CLIP tool (bug fixed)

eltetrado

A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures

rnpfind

Bioinformatics tool for exploring RNA-Protein interactions

squarna

RNA secondary structure prediction tool

seqme

Metrics for evaluating biological sequence design

pytximport

Feature-rich Python implementation of the tximport package for gene count estimation.

unitvelo

Temporally unified RNA velocity inference

streq

🧬 Python utilities for working with nucleotide sequence strings.

ncrnabert

ncRNABert: Deciphering the landscape of non-coding RNA using language model

hunana

A command-line tool that analyses the diversity and motifs of protein/nucleotide sequences.

bpforms

Toolkit for concretely describing non-canonical DNA, RNA, and proteins

starseqr

RNA Fusion Detection and Quantification

xpore

Identification of differential RNA modifications from nanopore direct RNA sequencing

dashingturtle

An application for building structural landscapes of RNA sequence modifications with Nanopore data. 📘 Documentation: https://dashing-turtle.readthedocs.io/