Scientific Computing Python Packages

scipy

SciPy library main repository

ruptures

ruptures: change point detection in Python

casadi

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

kneed

Knee point detection in Python :chart_with_upwards_trend:

scikit-video

Video Processing in Python

pyopencl

OpenCL integration for Python, plus shiny features

itk-io

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-registration

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-filtering

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-core

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-numerics

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

itk-segmentation

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

better-optimize

A friendlier front-end to scipy.optimize

pycuda

CUDA integration for Python, plus shiny features

freud-analysis

Powerful, efficient particle trajectory analysis in scientific Python.

regionmask

create masks of geospatial regions for arbitrary grids

findiff

Python package for numerical derivatives and partial differential equations in any number of dimensions.

eliot

Eliot: the logging system that tells you *why* it happened

multiscale-spatial-image

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.

swiglpk

Simple swig bindings for the GNU Linear Programming Kit

sk-video

Video Processing in Python

aicsimageio

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

yt

Main yt repository