Scientific Research Python Packages

pyvista

3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)

vedo

A python module for scientific analysis of 3D data based on VTK and Numpy

scibudy

Codex-native scientific research expansion assistant with scholarly search, library management, and local semantic analysis

scivision

scivision: a framework for scientific image analysis

particleanalyzer

A Computer Vision-Based Tool for Automatic Segmentation and Size Analysis of Nanoparticles in Scanning Electron Microscope (SEM) and Transmission Electron Microscope (TEM) Images

unittestersg

UnitTesterSG is for unit testing scientific/engineering outputs. It accommodates nested and even staggered array type structures, and mixed data types (like strings and integers etc). It also enables you to set numerical and absolute tolerances. Compatible with pytest.

pyvista-js

PyVista-like API for vtk.js

paperpipe

Extract equations and context from research papers for LLM coding assistants (arXiv, LaTeX, RAG)

scholaraio

Scholar All-In-One: A research infrastructure for AI agents

scienceai-llm

An AI-powered scientific literature search engine that uses OpenAI's language models to analyze research papers. It enables users to extract data, ask complex questions, and perform ad hoc literature reviews, handling hundreds of papers simultaneously without needing metadata.

arbiter-debate

Open-source framework for formally verifying academic paper claims using multi-agent LLM debate + Z3/Knuckledragger proof certificates. Supports OpenAI, Anthropic, Google, Grok.

dianna

Deep Insight And Neural Network Analysis

lorenzcycletoolkit

Program for computing the Lorenz Energy Cycle (LEC) in a closed region of the atmosphere.

scitex-skills

Reusable AI-agent skills for the SciTeX ecosystem — 426 pages across 64 packages, auto-refreshed hourly from PyPI.

data-to-paper

data-to-paper: Backward-traceable AI-driven scientific research

curie-ai

A package for scientific research experimentation agent

video-vocal-rt

Minimal package to record vocal response to video stimuli. Useful for vocal reaction time research using video stimuli instead of pictures.

labmate-mcp

Your AI lab companion — 78 MCP tools for literature, compounds, synthesis, benchwork, peptides & publication writing

freeclimber

FreeClimber is a background-subtracting particle detection platform designed to quantify group climbing performance in a Drosophila negative geotaxis (climbing) assay

arxiv-miner

ArXiv-Miner: Mine/Scrape Arxiv-Papers To Structured Datasets

vcams

Voxel-Based Computer-Aided Modeling Software for Complex Structures

hmsm

Tools for image based MIDI generation from historical music storage media