Sed Ml Python Packages

biosimulators-utils

Utilities for building standardized command-line interfaces for biosimulation software packages

biosimulators-test-suite

Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators

kisao

Ontology of algorithms for analyzing biological models, their parameters, and their outputs

biosimulators-copasi

COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-tellurium

tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-amici

AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-gillespy2

GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-pysces

PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-cobrapy

COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-bionetgen

BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-boolnet

BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biomodels

Python library to download and cache models from BioModels

biosimulators-pyneuroml

pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-cbmpy

CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-xpp

XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-masspy

MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulators-opencor

OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulations-modeldb

Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations

biosimulators-ginsim

GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

biosimulations-bigg

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

biosimulators-rbapy

BioSimulators-compliant command-line interface to the RBApy simulation program.