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Sequence Python Packages

Python packages with the GitHub topic sequence. Sorted by relevance, with stars and monthly downloads.
WenjieDu
pygrinder

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

122K 65 6
lmdu
pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

88K 294 24
m-matelski
mdiff

Package for finding difference between two input sequences with ability to detect sequence elements displacements.

12K 32 0
Liang-Team
sequenzo

A fast, scalable, and intuitive Python package in sequence analysis.

9K 34 10
OmenApps
django-generate-series

Use Postgres' generate_series to create sequences with Django's ORM

5K 33 3
biolab
orange3-timeseries

🍊 :chart_with_upwards_trend: Orange add-on for analyzing, visualizing, manipulating, and forecasting time series data.

4K 66 41
PythonSJL
pypynum

PyPyNum is a versatile Python math lib. It features modules for math, data analysis, arrays, crypto, physics, RNG, data proc, stats, eq solving, image proc, interp, matrix calc, and high-prec math. Designed for scientific computing, data science, and ML, it offers efficient, general-purpose tools.

4K 32 1
modernatx
seqlike

Unified biological sequence manipulation in Python

3K 208 21
scala-tessella
ring-seq-py

A Pythonic class for sequences considered circular

1K 0 0
akikuno
cstag

Python module to manipulate and visualize minimap2's cs tag

1K 11 0
PythonSJL
numpypy

PyPyNum is a versatile Python math lib. It features modules for math, data analysis, arrays, crypto, physics, RNG, data proc, stats, eq solving, image proc, interp, matrix calc, and high-prec math. Designed for scientific computing, data science, and ML, it offers efficient, general-purpose tools.

1K 32 1
maxdoblas
quicked

QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.

911 29 2
bioconvert
bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

809 391 45
biolab
bluewhale3-timeseries

🍊 :chart_with_upwards_trend: Orange add-on for analyzing, visualizing, manipulating, and forecasting time series data.

701 66 41
mutalyzer
mutalyzer-algebra

A Boolean Algebra for Genetic Variants

648 13 2
scbirlab
streq

🧬 Python utilities for working with nucleotide sequence strings.

629 0 0
incertae-sedis
smof

Explore and analyze biological sequence data

561 17 3
WithPrecedent
camina

Flexible, lightweight, extensible, easy-to-use data structures for Python

470 0 0
rkmlab
perf-ssr

PERF is an exhaustive repeat finder

428 33 11
hansalemaos
a-pandas-ex-sequence-search

Sequence / string search with NumPy in pandas DataFrames

401 0 0
virologycharite
sars2seq

A Python library and command-line scripts for working with SARS-CoV-2 sequences

383 2 0
hansalemaos
npsearchsequence

Sequence / string search with NumPy

344 0 0
NASA-AMMOS
seq-json-schema

Standardized JSON Schema for authoring multi-mission sequences.

300 9 2
WenjieDu
pycorruptor

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

289 65 6
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