Spike Sorting Python Packages

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

35K 780 261

kilosort

Fast spike sorting with drift correction

7K 608 286

sortingview

Web app for viewing results of ephys spike sorting

6K 28 9

spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

5K 117 48

isosplit6

Isosplit clustering

2K 9 6

mountainsort5

MountainSort 5 spike sorting algorithm

2K 59 18

spikeinterface-gui

GUI for spikeinterface objects

2K 68 19

zpe-neuro

ZPE-Neuro V0.0: DETERMINISTIC NEURAL SIGNAL CODEC: Extracellular Spikes | Neuropixels | DANDI-Anchored | IBL Validated | Spike Train Transport

762 0 0

neurocomputers

NeuroBridge API — 123 endpoints, 55+ analysis modules for brain organoid data. Organoid IQ, STDP, attractors, consciousness metrics, and more.

749 0 0

ml-ms4alg

MountainSort v4

637 8 19

spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

630 20 20

catsort

A collision-aware with template matching spike sorter

584 2 0

isosplit5

Efficient clustering algorithm for unknown number of unimodal clusters

473 2 7

herdingspikes

Software for high density electrophysiology

450 31 18

hs-detection

Optimized spike detection based on https://github.com/mhhennig/HS2

375 0 5

spikely

Spike sorting made simple

277 15 7

shybrid

a graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance

167 11 2

yass-algorithm

YASS: Yet Another Spike Sorter

165 69 15

synapticonn

Inferring monosynaptic connections in neural circuits.

146 2 0

spike-cluster-score

Spike Cluster Score (SCS) is a clustering performance metric designed with the purpose of spike sorting in mind.

62 0 0