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Spike Sorting Python Packages

Python packages with the GitHub topic spike-sorting. Sorted by relevance, with stars and monthly downloads.
SpikeInterface
spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

35K 780 261
MouseLand
kilosort

Fast spike sorting with drift correction

7K 608 286
magland
sortingview

Web app for viewing results of ephys spike sorting

6K 28 9
SpikeInterface
spikeextractors

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

5K 117 48
magland
isosplit6

Isosplit clustering

2K 9 6
flatironinstitute
mountainsort5

MountainSort 5 spike sorting algorithm

2K 59 18
SpikeInterface
spikeinterface-gui

GUI for spikeinterface objects

2K 68 19
Zer0pa
zpe-neuro

ZPE-Neuro V0.0: DETERMINISTIC NEURAL SIGNAL CODEC: Extracellular Spikes | Neuropixels | DANDI-Anchored | IBL Validated | Spike Train Transport

762 0 0
Luckyguybiz
neurocomputers

NeuroBridge API — 123 endpoints, 55+ analysis modules for brain organoid data. Organoid IQ, STDP, attractors, consciousness metrics, and more.

749 0 0
magland
ml-ms4alg

MountainSort v4

637 8 19
SpikeInterface
spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

630 20 20
lucasbeziers
catsort

A collision-aware with template matching spike sorter

584 2 0
magland
isosplit5

Efficient clustering algorithm for unknown number of unimodal clusters

473 2 7
mhhennig
herdingspikes

Software for high density electrophysiology

450 31 18
lkct
hs-detection

Optimized spike detection based on https://github.com/mhhennig/HS2

375 0 5
SpikeInterface
spikely

Spike sorting made simple

277 15 7
jwouters91
shybrid

a graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance

167 11 2
paninski-lab
yass-algorithm

YASS: Yet Another Spike Sorter

165 69 15
mzabolocki
synapticonn

Inferring monosynaptic connections in neural circuits.

146 2 0
ArdeleanRichard
spike-cluster-score

Spike Cluster Score (SCS) is a clustering performance metric designed with the purpose of spike sorting in mind.

62 0 0
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