Synthetic Biology Python Packages

dnachisel

:pencil2: A versatile DNA sequence optimizer

dna-features-viewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

snapgene-reader

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

sequenticon

:space_invader: Generate identicons for DNA sequences with Python

codontransformer

CodonTransformer (2M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression

ostir

Software for predicting translation initiation rates in bacteria

dnacauldron

Cloning simulation for DNA assembly (Golden Gate, Gibson...)

deepbgc

BGC Detection and Classification Using Deep Learning

ypkpathway

Automatic pathway assembly with the YeastPathwayKit

geneblocks

Library to compare DNA sequences (diff, common blocks, etc.)

symbac

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

teemi

A Python package for constructing microbial strains

dasi

A Python molecular biology CAD tool with a dead-simple user interface

dnadesign

A lua package for designing DNA.

bandwagon

🎺 Plot DNA digestion band patterns with Python

plateo

🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more

dna-features-viewer-lite

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

genedom

Genetic part standardization

bandwitch

💫 Computer-aided DNA assembly validation and identification from restriction digests.

dnaweaver

A route planner for DNA assembly

tatapov

Tools for DNA overhang misannealing data.

retropath2-wrapper

'python wrapper to run retropath2.0 knime workflow'

goldenhinges

DNA overhang design for Golden Gate etc.

caravagene

🎨 Python library to plot multi-part genetic constructs