Trajectory Analysis Python Packages

mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics simulations.

evo

Python package for the evaluation of odometry and SLAM

movingpandas

MovingPandas - a Python library for movement data exploration and analysis

pyztraj

High-performance molecular dynamics trajectory analysis library in Zig

traj-dist-rs

trajectory similarity high performance solution in rust with python binding

pymolar

Repository for molar crate and its dependencies

znh5md

ZnH5MD - High Performance Interface for H5MD Trajectories

trajectopy

Trajectory Evaluation in Python

mdanalysistests

MDAnalysis is a Python library to analyze molecular dynamics simulations.

mdacli

Command line interface for MDAnalysis

scdef

Deep exponential families for single-cell data.

pytraj

Python API for cpptraj: a data analysis package for biomolecular simulation

yupi

Python package designed for collecting and processing trajectory data.

membrane-curvature

MDAnalysis tool to calculate membrane curvature.

traja

Traja is a trajectory analysis and visualization tool

pytrack-lib

a Map-Matching-based Python Toolbox for Vehicle Trajectory Reconstruction

pymove

PyMove is a Python library to simplify queries and visualization of trajectories and other spatial-temporal data

ptrail

PTRAIL is a state-of-the art parallel computation library for Mobility Data Preprocessing and feature extraction.

amep

Data analysis package for active and soft matter simulations

pactus

Framework to evaluate Trajectory Classification Algorithms

qitos

Let's Qitos! A torch-like agent-native framework for researchers.

trajpy

Trajpy - empowering feature engineering for trajectory analysis across domains.

ccsf

Leveraging cell-cell similarity for high-performance spatial and temporal cellular mappings from gene expression data (Cell Patterns, 2023)

mda

:hammer: Analysis Tools for MD Simulations