Umap Python Packages

umap-learn

Uniform Manifold Approximation and Projection

torchdr

TorchDR - PyTorch Dimensionality Reduction

ellama

Embeddings interface for Ollama

ilayoutx

Graph layout algorithms in Rust/Python

scarf

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

mepylome

Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files

drift-lens-monitor

Your metrics lie. Your embeddings don't. Detect embedding space drift before accuracy drops with FED, MMD, and Topology-aware monitoring.

simpletopicmodel

Easily identifying themes in text

mlx-vis

Pure MLX implementations of UMAP, t-SNE, PaCMAP, LocalMAP, TriMap, DREAMS, CNE, MMAE, and NNDescent for Apple Silicon. Metal GPU acceleration for both computation and video rendering. No scipy, no sklearn, no matplotlib.

dire-rapids

DiRe accelerated by PyTorch, PyKeOps and cuVS

umato

Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)

dbmap

dbMAP: diffusion metrics, graphs and layouts for machine-learning

embeddings2image

create "Karpathy's style" 2d images out of your image embeddings

knrscore

KNRScore is a Python package for computing K-Nearest-Rank Similarity, a metric that quantifies local structural similarity between two maps or embeddings.

dire-jax

A JAX-based Dimension Reducer

usum

USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE

lensed-umap

Functions that filter UMAP graphs using domain knowledge.

umapjax

UMAP, but accelerated.

umap-learn-no-tf

Uniform Manifold Approximation and Projection

raccoon-cluster

Multi-scale clustering in Python

dimensionality-reduction-package

Python package for plug and play dimensionality reduction techniques and data visualization in 2D or 3D.

scarf-toolkit

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.