Zarr Python Packages

tifffile

Read and write TIFF files.

zarr

An implementation of chunked, compressed, N-dimensional arrays for Python.

imagecodecs

Image transformation, compression, and decompression codecs.

numpydantic

Type annotations for specifying, validating, and serializing arrays with arbitrary backends in Pydantic (and beyond)

ome-zarr

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

imagecodecs-numcodecs

Image transformation, compression, and decompression codecs.

ome-zarr-models

A minimal Python package for reading, writing and validating OME-Zarr (meta)data

tensogram

A library for encoding and decoding binary scientific data with embedded semantic metadata in a network-transmissible binary message format.

multidimio

Cloud-native, scalable, and user-friendly multi dimensional energy data!

fileglancer

Browse, share, and publish OME-Zarr data

cubed

Scalable array processing with bounded memory

xarray-beam

Distributed Xarray with Apache Beam

ome-writers

Unified API for streaming camera frames to either OME-TIFF or OME-Zarr format

napari-ome-zarr

A napari plugin for zarr backed OME-NGFF images

tensogram-xarray

xarray backend engine for tensogram .tgm files

tensogram-zarr

Zarr v3 store backend for tensogram .tgm files

echopype

Enabling interoperability and scalability in ocean sonar data analysis

cellmap-data

Utility for loading CellMap data for machine learning training, utilizing PyTorch, TensorStore, Xarray, and PyDantic.

zarrnii

Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

eubi-bridge

A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

pangeo-forge-recipes

Python library for building Pangeo Forge recipes.

tensogram-anemoi

anemoi-inference output plugin for tensogram .tgm files

thyra

A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.

omero-cli-zarr

Plugin for exporting images in zarr format.