17 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Extract 3D contacts (.pairs) from sequencing alignments | 14K | |
| A toolkit for processing single cell Hi-C data | 5K | |
| gReLU is a python library to train, interpret, and apply deep learning models to... | 4K | |
| The tools for your .cool's | 2K | |
| METALoci: spatially auto-correlated signals in 3D genomes | 2K | |
| MODAS: Multi-Omics Data Association Study toolkit | 2K | |
| trackc aims to produce beautiful genome tracks that are highly customizable | 616 | |
| Add a short description here! | 601 | |
| Genomics research toolkit for jointly embedding Hi-C 3D chromatin contact matric... | 448 | |
| Statistical analysis, clustering and visualinzing scientific data with hassle fr... | 394 | |
| Python package to generate prior gene regulatory networks. | 370 | |
| Tool & python package for calculating genome wide pileup mappability | 279 | |
| Genomic data processing toolkit | 192 | |
| A python-based transcriptomics library | 182 | |
| A Python toolkit for copy number visualization and multi-sample comparison | 163 | |
| Tools for working with genomic intervals and sequences | 144 | |
| Visualization of 3D genome models in notebooks | 136 |
