39 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Calcium Signal Propagation Speed Analysis Library | 3K | |
| A plugin to read, write, and manage image data in napari | 3K | |
| MicroLive: An Image Processing Toolkit for Quantifying Live-cell Single-Molecule... | 2K | |
| A napari plugin for counting organoids from brightfield microscopy images with d... | 2K | |
| Collection of representation learning models, techniques, callbacks, utils, used... | 2K | |
| python3 physicell data output loader. | 2K | |
| A plugin to leverage ML segmentation in napari | 1K | |
| An open-source Python toolkit for large-scale fluorescence microscopy data align... | 1K | |
| Using OME specifications with Apache Arrow for fast, queryable, and language agn... | 1K | |
| A project to read microscopy files. | 1K | |
| Napari plugin to manually correct epithelia segmentation in movies | 1K | |
| Collection of tasks for initializing ABM simulations. | 1K | |
| Napari plugin for custom analysis and visualization of lattice lightsheet and Ob... | 1K | |
| Python package for deep learning based image to image transformation | 812 | |
| Quantifying senescence, the easy way. | 769 | |
| Segmentation of microscopy images and data analysis pipeline with a graphical us... | 595 | |
| Napari plugin for analysing and visualizing lattice lightsheet and Oblique Plane... | 592 | |
| Add your description here | 565 | |
| A simple plugin to fuse microscopy images in napari | 434 | |
| A simple plugin to batch segment cells with cellpose | 419 | |
| Leonardo: an LSFM image processing toolset | 411 | |
| A plugin that enables annotations provided by Allen Institute for Cell Science | 410 | |
| A BioIO conversion tool for going between image formats | 391 | |
| Comprehensive package for analysis of Optical Pooled Screens (OPS) for biologica... | 385 | |
| Python Calcium Recording Analysis and Inference Toolbox | 310 | |
| A simple plugin to destripe microscopy images in napari | 302 | |
| A collection of Python scripts for iSCAT microscopy data analysis | 274 | |
| A simple plugin to use the Bioio reader in napari | 263 | |
| PixelPatrol add-on package for loading images with bioio and zarr | 260 | |
| This package makes easy to replicate figures and movies from microscopy data fro... | 242 | |
| Human in the loop 2d cell migration analysis | 219 | |
| A simple automated feedback microscopy tool for live tracking of moving samples. | 210 | |
| Segments and tracks bacteria | 177 | |
| Lab for quantitative bioimage analysis experiments in Python | 175 | |
| Sample data for napari-ndev | 158 | |
| Save multidimensional file as folder of tifs | 148 | |
| OME-XML utility functions for HuBMAP computational pipelines | 128 | |
| A Bachelor Thesis project to allow Segmentation of Astrocytes on GFAP Staining u... | 120 | |
| A Python package for analyzing 3D vascular structures from segmentations | 91 |
