22 dependents
| Package | Description | Downloads/month |
|---|---|---|
| h5py driver for cogent3 unaligned and aligned seqs data | 9K | |
| Python bindings for IQTree | 6K | |
| Tools for analysis of sequence divergence | 5K | |
| Meteor is a plateform for quantitative metagenomics profiling of complex ecosyst... | 3K | |
| Filtering workflow for identifying mis-annotations in genome annotations using a... | 1K | |
| A new approach to obtaining local copies of ensembl data | 900 | |
| CLOCI (Co-occurrence Locus and Orthologous Cluster Identifier) identifies gene c... | 691 | |
| mdeq: mutation disequilibrium analysis tools. | 525 | |
| A supertree method for rooted source trees | 477 | |
| GraphBin: Refined binning of metagenomic contigs using assembly graphs. | 465 | |
| GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly ... | 386 | |
| A collection of python-based phylogenetic analysis and comparison tools | 324 | |
| A library for checking the limits of phylogenetic tree estimation. | 323 | |
| A Python Implementation of pyTax4Fun2 for Functional Profiling and Redundancy An... | 267 | |
| gbintk (GraphBin-Tk): Assembly graph-based metagenomic binning toolkit | 266 | |
| A plugin for converting a cogent3 tree to ete3 tree object | 216 | |
| CoDIAC: Comprehensive Domain Interface Anlysis of Contacts | 212 | |
| mutation_motif, software for analyses of point mutations, see https://www.ncbi.n... | 200 | |
| A utility to generate input files for taxonomy propagation and assignment in QII... | 141 | |
| A cogent3 pykmertools app | 117 | |
| TreeTOP | 66 | |
| Python bindings for IQTree | 7 |
