22 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Official DeepLife Python toolkit on PyPI: TwinCell (`deeplife_toolkit.twincell`)... | 3K | |
| Deep exponential families for single-cell data. | 2K | |
| Package introducing the InSituPy framework to analyze single-cell spatial transc... | 2K | |
| A tool to predict transcription co-regulators for a gene from gene expression da... | 1K | |
| TFit : Assessing the combinatorial potential of Transcription Factors in Gene Re... | 1K | |
| Awesome Benchmark of Gene Regulatory Networks | 1K | |
| A toolkit for subcellular analysis of spatial transcriptomics data | 741 | |
| End-to-end analysis of spatial multi-omics data | 723 | |
| Supervised OT with Global Ground Metric Learning | 694 | |
| Single-cell data preprocessing for multiple samples. | 651 | |
| Single-cell differential expression | 586 | |
| Package to evaluate gene regulatory networks (GRNs). | 542 | |
| MCP server for biological activities analysis using decoupler | 492 | |
| Pareto Task Inference in Python | 384 | |
| BioRAG: A tool for textual and gene set search against ARCHS4 data | 372 | |
| Spatial transcriptome analysis in python | 257 | |
| Comprehensive spatial transcriptomics analysis library with advanced segmentatio... | 237 | |
| NetworkCommons is a community-driven platform designed to simplify access to too... | 196 | |
| SampleExplorer: A tool for textual and gene set search against ARCHS4 data | 154 | |
| TF activity inference, reliability estimation, and perturbation prediction. | 147 | |
| Provival | 115 | |
| scMagnify is a versatile Python toolkit for inferring and analyzing gene regulat... | 71 |
