50 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Virus discovery | 21K | |
| Sequence correction provided by ONT Research | 11K | |
| Neural network sequence error correction. | 5K | |
| Structural variant toolkit for VCFs | 3K | |
| Structural variation caller using third generation sequencing | 2K | |
| Kwola makes an AI powered tool for finding bugs in software | 2K | |
| Findpapers is an application that helps researchers who are looking for referenc... | 1K | |
| Toolkit for fast genomic variant transformations and intersects | 1K | |
| tags reads in target bam based on other bam files | 1K | |
| Tools and data to work with data from the oireachtas api a bit easier | 1K | |
| A method for circular DNA detection based on probabilistic mapping of ultrashort... | 1K | |
| Pan-Genome Analysis Pipeline | 1K | |
| Language models for Biological Sequence Transformation and Evolutionary Represen... | 1K | |
| 999 | ||
| 930 | ||
| Reference-free clustering and consensus forming of long-read amplicon sequencing | 796 | |
| AMPtk: amplicon tool kit | 681 | |
| Circular RNA Identification for Nanopore Sequencing | 644 | |
| A collection of objects and functions to work with calling cards sequencing tool... | 629 | |
| A tool for performing complex text alignment processes. | 627 | |
| Tool to evaluate NER on noisy text. | 596 | |
| gapmm2: gapped alignment using minimap2 | 484 | |
| A factuality evaluation metric for evaluating plain language summaries using que... | 468 | |
| De novo construction of isoforms from long-read data | 457 | |
| A fully-equipped, fast, memory-efficient pre-processor for ONT transcriptomic da... | 431 | |
| Strand orientation, artifact removal, and chimeric read rescue for ONT direct-cD... | 363 | |
| A modular architecture for deep learning systems. | 341 | |
| BITS: miscellaneous BioInformatics ToolS | 335 | |
| Adjusted Identity Calculator for DNA Sequences with MycoBLAST-style preprocessin... | 334 | |
| High-quality clustering and consensus generation for Oxford Nanopore amplicon re... | 300 | |
| delfies is a tool for the detection of DNA Elimination breakpoints | 270 | |
| CRISPECTOR2 - Genome Editing Analysis Tool, with allele extension | 229 | |
| spaceranger wrangling tools for Oxford Nanopore Technologies' data | 208 | |
| Demultiplex single-cell antibody repertoires with precision and paired insight. | 201 | |
| 186 | ||
| Dual barcode and primer demultiplexing system for MinION sequenced reads | 175 | |
| QUIck Clonal Analysis Toolkit - quicat | 173 | |
| Oligopool Calculator - Automated design and analysis of oligo pool libraries | 165 | |
| The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTM... | 165 | |
| dt4dds is a Python package providing a customizable, digital representation of t... | 148 | |
| Structural Variant Identification Method using Genome Assemblies | 138 | |
| 117 | ||
| A Python package to design probes against overrepresented sequences in a fastq f... | 101 | |
| Fast Python library for plasmid annotation and makeability scoring | 100 | |
| rrequested-demultiplex: A versatile package to preprocess raw basecalled reads w... | 99 | |
| 81 | ||
| A fully-equipped, fast, memory-efficient pre-processor for ONT transcriptomic da... | 75 | |
| 64 | ||
| An integrated tool for annotating the motif variation and complex patterns in ta... | 59 | |
| rrequested-pkg: A versatile package to preprocess raw basecalled reads with qual... | 1 |
