61 dependents
| Package | Description | Downloads/month |
|---|---|---|
| User Friendly Application for Comprehensive Transcriptome Analysis | 6K | |
| Utilities for analysis of adaptive immune receptor repertoire (AIRR) data | 5K | |
| DBRetina Python Package | 4K | |
| InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection... | 4K | |
| Ancestral recombination graph (ARG) | 3K | |
| 2K | ||
| A workflow for clustering continuous time series with a deep scattering network. | 2K | |
| mosaicMPI: mosaic multi-resolution program integration | 2K | |
| S2AND | 2K | |
| Clustering phylogenetic trees with python | 2K | |
| A toolkit of spatial transcriptomic analysis. | 2K | |
| ScanPy Extension and kwarg Preferences | 2K | |
| A Repository for Single- and Multi-modal Speaker Verification, Speaker Recogniti... | 2K | |
| Package to analyze calcium fluorescence events in astrocytes | 1K | |
| astir | Automated cell identity from single-cell multiplexed imaging and proteom... | 1K | |
| Further development of CoSpar happens here! | 846 | |
| A comprehensive toolkit for processing and analyzing metabolomics data. | 838 | |
| Analytical framework for BS-seq data comparison and visualization | 830 | |
| Multi Affinity Network Association | 801 | |
| Tools for analyzing in-phase / quadrature signals from superconducting quantum s... | 586 | |
| MS-MINT is a Python application for processing, analyzing, and visualizing large... | 577 | |
| A Python package for perturbational single-cell data analysis | 556 | |
| Single cell analysis of B cells | 541 | |
| A package for analyzing and visualizing gene expression data | 541 | |
| A Python package of cooperative co-evolutionary algorithms for feature selection... | 523 | |
| Utility tool for detecting R-loops with Nanopore data | 443 | |
| Statistical analysis, clustering and visualinzing scientific data with hassle fr... | 394 | |
| A python library for accurate and scaleable data deduplication and entity-resolu... | 384 | |
| Salamander is a non-negative matrix factorization framework for signature analys... | 366 | |
| Processing pipeline for cellfinder. Quantifies cell positions and produces figur... | 353 | |
| KAILINss - TOGGLE(KAILIN): Single Cell Fate Tracing tools | 333 | |
| ProteoFlux is an open-source Python framework for transparent, reproducible down... | 321 | |
| Frequency Techniques for I/O | 298 | |
| KAILINss - TOGGLE(KAILIN): Single Cell Fate Tracing tools | 296 | |
| General tools for genomics and lineage tracing | 290 | |
| Package for STANdard drug Screening by COllaborative FIltering. Performs benchma... | 277 | |
| A tool for handling DNA methylation data in bedMethyl format | 275 | |
| Cell Lineage from Normalized Covariance | 273 | |
| A python package for performing single NMF and joint NMF algorithms | 266 | |
| plagiarism detection using MOSS with post-processing | 264 | |
| A Python library that reproduces and extends text analysis tools from the Lexos ... | 258 | |
| CluBCpG is a software package built to analyze whole genome bisulfite sequencing... | 243 | |
| NMF solver for gene programs. | 229 | |
| A package designed to allow scoring of gene expression patterns using the Gene E... | 211 | |
| hierachical tree 檢索法 | 194 | |
| An analysis framework for monotonous Boolean model ensemble | 190 | |
| Linkage clustering via Approximate Nearest Neighbors | 168 | |
| Beautiful and interactive visualisations for NLP Topics | 151 | |
| A scalable framework for automatically indexing microbial genomes and accurately... | 125 | |
| Modified version of Valis used for HEST. Please visit the original Valis repo fo... | 115 |
