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Dependencies
- anndata >=0.7.5
- arboreto ==0.1.6
- bokeh ==2.4.3
- cell-bin ==1.3.4.1
- colorcet >=3.1.0
- dask >=2023.3.2
- datashader >=0.15.2
- distinctipy >=1.2.2
- distributed >=2023.3.2.1
- fastcluster ==1.2.6
- fbpca >=1.0
- gefpy >=1.2.6
- geosketch >=1.2
- gtfparse ==1.2.1
- h5py >=3.7.0
- harmonypy ==0.0.6
- holoviews ==1.17.1
- hotspotsc ==1.1.3
- hvplot >=0.9.0
- imageio ==2.31.1
- joblib >=1.3.2
- kdepy ==1.1.11
- leidenalg >=0.10.1
- loompy ==3.0.6
- louvain >=0.8.0
- lxml >=4.8.0
- matplotlib <=3.7.5,>=3.7.1
- natsort ~=7.1.1
- numba ==0.56.4
- numpy ==1.23.5
- opencv-python >=4.8.0.76
- packaging >=23.1
- pandas >=1.5.3
- panel ==0.14.4
- param ==1.13.0
- patsy ~=0.5.1
- phenograph ==1.5.7
- pillow >=10.1.0
- plotly >=5.15.0
- pot ==0.9.1
- pyarrow >=10.0.1
- pycirclize >=0.5.0
- pyscenic >=0.12.1
- requests >=2.31.0
- scikit-image >=0.21.0
- scikit-learn >=1.3.0
- scipy ==1.10.1
- seaborn >=0.13.0
- setuptools ==69.5.1
- shapely >=2.0.0
- slideio >=1.0.0
- spatialpandas >=0.4.4
- sqlalchemy ==1.3.24
- squidpy ==1.2.2
- statsmodels >=0.14.0
- tifffile >=2023.2.3
- tqdm >=4.60.0
- typing-extensions >=4.7.1
- umap-learn ==0.5.1
- urllib3 ==2.1.0
- xarray ==0.20.1
63 optional dependencies
- albumentations[image-cu12]
- albumentations[image]
- albumentations[image-cu11]
- cell-bin[image-cu11]
- cell-bin[image]
- cusingler[singler-gpu]
- fastremap[image-cu11]
- fastremap[image-cu12]
- fastremap[image]
- nbformat[spt-cu12]
- nbformat[spt-cu11]
- nbformat[spt]
- onnxruntime[image]
- onnxruntime-gpu[image-cu11]
- onnxruntime-gpu[image-cu12]
- patchify[image]
- patchify[image-cu12]
- patchify[image-cu11]
- pygam[spt-cu11]
- pygam[spt-cu12]
- pygam[spt]
- pysal[spt-cu12]
- pysal[spt]
- pysal[spt-cu11]
- quantecon[spt-cu12]
- quantecon[spt]
- quantecon[spt-cu11]
- roifile[image-cu12]
- roifile[image-cu11]
- roifile[image]
- stereopy[all-cu11]
- stereopy[all]
- stereopy[all-cu12]
- tables[image-cu12]
- tables[image]
- tables[image-cu11]
- tensorflow[image-cu12]
- tensorflow[image-cu11]
- tensorflow[image]
- torch[spatialign-cu12]
- torch[spt]
- torch[spt-cu11]
- torch[spt-cu12]
- torch[image-cu11]
- torch[image]
- torch[image-cu12]
- torch[spatialign]
- torch[spatialign-cu11]
- torch-cluster[spatialign]
- torch-cluster[spatialign-cu12]
- torch-cluster[spatialign-cu11]
- torch-geometric[spatialign-cu12]
- torch-geometric[spatialign]
- torch-geometric[spatialign-cu11]
- torch-scatter[spatialign-cu12]
- torch-scatter[spatialign]
- torch-scatter[spatialign-cu11]
- torch-sparse[spatialign-cu11]
- torch-sparse[spatialign]
- torch-sparse[spatialign-cu12]
- torchvision[image]
- torchvision[image-cu12]
- torchvision[image-cu11]