42 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Fill holes in binary 2D & 3D images fast. | 106K | |
| a generalist algorithm for cellular segmentation with human-in-the-loop capabili... | 85K | |
| Efficient parallelizable algorithms for multidimensional arrays to speed up your... | 57K | |
| 3D dense segmentation compression codec based on crack codes. | 55K | |
| Skeleton object used for representing neurons, adjacent cells, and organelles. | 36K | |
| Read and write Neuroglancer datasets programmatically. | 32K | |
| Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Tra... | 29K | |
| Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, ... | 12K | |
| spaCR Spatial phenotype analysis of CRISPR–Cas9 screens (spaCR) | 5K | |
| Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast ... | 3K | |
| Robust skeletonization of PyChunkedGraph-backed objects | 3K | |
| Unified tool for mesh generation, multiresolution mesh creation, skeletonization... | 2K | |
| Tools to work with the FlyWire connectome. Fully interoperable with navis. | 2K | |
| label matrix coloring algorithm | 2K | |
| Code to perform analysis on segmentations like those produced by CellMap | 2K | |
| Package for instanseg-torch PyPi | 2K | |
| Omnipose: a high-precision solution for morphology-independent cell segmentation | 1K | |
| Obsessive Coder's Dependency Toolkit — Python utilities for array manipulation, ... | 1K | |
| A probabilistic cell typing algorithm for spatial transcriptomics. | 1K | |
| Spatial phenotype analysis of crisp screens (SpaCr) | 1K | |
| A package for calcium image processing | 651 | |
| Commonly used Python code at the Center for Advanced Light Microscopy | 644 | |
| Compose chunk operators to create a pipeline for local or distributed petabyte-s... | 636 | |
| Random mesh and related utilities in Python. | 610 | |
| wrapper for brain segmentation tools | 590 | |
| Saccadic Fast Fourier Transform (SFFT) algorithm for Image subtraction in Fourie... | 576 | |
| MultiCellPose: segmentation and analysis toolkit for multimodal microscopy | 542 | |
| Generalized Live Cell Segmentation with DINOv2 Pretraining | 518 | |
| A verison of isosegdenoise with strictly defined dependencies for more stable in... | 511 | |
| A morphological analysis tool for feature extraction of stained cell images buil... | 413 | |
| A package for 3D medical image segmentation using deep learning techniques. | 382 | |
| The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the ... | 370 | |
| The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the ... | 368 | |
| Realtime prediction using neuroglancer | 344 | |
| 310 | ||
| Saccadic Fast Fourier Transform (SFFT) algorithm for Image subtraction in Fourie... | 251 | |
| Framework for syncing representations and features of morphology | 178 | |
| A plugin to quickly generate dense ground truth with sparse labels | 167 | |
| a generalist algorithm for cellular segmentation | 132 | |
| Interactive batch annotation tool for microscopy datasets with tiled grid visual... | 126 | |
| A microscopical image and video platform applied to the analysis of levitating d... | 106 | |
| Framework for Cell & Region Image Segmentation/Classification | 37 |
