94 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Splicing-regulatory Driver Genes Identification Tool | 198K | |
| exprmat: Routines for expression matrices | 15K | |
| SCIV algorithm | 11K | |
| Ranking metabolite (and other omics sets) by their activity levels via SVD | 9K | |
| PyWGCNA is a Python package designed to do Weighted Gene Correlation Network ana... | 7K | |
| AI Agents for drug discovery, drug development, and other pharmaceutical R&D. | 6K | |
| Sequana: a set of Snakemake NGS pipelines | 6K | |
| The self-evolving agentic framework for bioinformatics | 5K | |
| The Kinase Library Project: a Global Atlas of the Human Protein Kinome | 4K | |
| Single Sample Network Analysis | 3K | |
| Popari: a probabilistic graphical model for integrated spatial transcriptomics a... | 3K | |
| TBD | 3K | |
| A python library for multi omics included bulk, single cell and spatial RNA-seq ... | 2K | |
| Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering ... | 2K | |
| MultiGATE single cell | 2K | |
| single cell foundation model for Gene network inference and more | 1K | |
| 1K | ||
| 🎨 Toolkit for generating publication-quality plots for Cell, Nature and Science ... | 1K | |
| Detection of PatIent-Level distances from single cell genomics and pathomics dat... | 1K | |
| A package for performing normalized single sample single -omic/ integrated multi... | 1K | |
| Human Cytokine Dictionary | 1K | |
| Awesome Benchmark of Gene Regulatory Networks | 1K | |
| Single sample pathway analysis tools for omics data | 942 | |
| Structural and site-specific Glycoproteomics Analysis Platform | 926 | |
| Further development of CoSpar happens here! | 846 | |
| Awesome GRN enhanced AnnData toolkit | 819 | |
| GPTBioInsightor utilizes the powerful capabilities of large language models to h... | 798 | |
| A Python package with statistical functions to analyse multimodal molecular data | 725 | |
| 统一的细胞类型分析工具包，集成四个专业Agent提供完整的细胞类型注释流程 | 666 | |
| Single cell and spatial proteomics data analysis | 656 | |
| OmicScope: from quantitative proteomics to systems biology visualization | 636 | |
| Generalizable AI predicts immunotherapy outcomes across cancers and treatments | 610 | |
| 590 | ||
| Single-cell differential expression | 586 | |
| A package for transcriptional regulatory network analysis | 583 | |
| Probabilistic factor analysis model with covariate guided factors | 540 | |
| A network-based approach for exon set enrichment | 538 | |
| SpaGFT: Graph Fourier transform for spatial omics representation and analyses of... | 516 | |
| An approch for interpreting disease-associated human variants using single-cell ... | 512 | |
| GUI tools for gene set enrichment analysis | 493 | |
| SCIV: Unveiling the pivotal cell types involved in variant function regulation a... | 469 | |
| A permutation-free framework for scalable, robust, and reference-based cell-cell... | 466 | |
| scPRINT-2 is a Large Cell Model for Gene Network Inference, Denoising and more f... | 463 | |
| A Python toolkit for bulk RNA-seq analysis of the tumor microenvironment, transf... | 446 | |
| A user-friendly package for analyzing gene interactions and transcriptional burs... | 408 | |
| Convenient and user-friendly package to streamline common workflows in single-ce... | 404 | |
| A comprehensive RNA-seq and scRNA-seq integration analysis tool | 372 | |
| CellGen: a computational model for predicting the cellular response to diverse p... | 366 | |
| A Python package for processing multi-platform, multi-sample CCI data | 356 | |
| Python package for topic modelling | 350 |
