33 dependents
| Package | Description | Downloads/month |
|---|---|---|
| RNA Velocity generalized through dynamical modeling | 18K | |
| exprmat: Routines for expression matrices | 15K | |
| A framework for state-of-the-art pre-trained bio foundation models on genomics a... | 7K | |
| pegasus io module for reading/writing single-cell genomics data | 6K | |
| A tool for analyzing trascriptomes of millions of single cells. | 5K | |
| A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-proce... | 4K | |
| Mapping Vector Field of Single Cells | 4K | |
| Single-cell RNA Binding Protein Regulon Inference | 4K | |
| 🍊🔬 Orange add-on for gene expression of single cell data | 2K | |
| Porting of Protein Activity and Pathway Inference to single cell and Python. | 2K | |
| A toolkit of spatial transcriptomic analysis. | 2K | |
| Python readers for different data formats for FASTGenomics. | 1K | |
| Scripts for using scanpy | 1K | |
| astir | Automated cell identity from single-cell multiplexed imaging and proteom... | 1K | |
| An effective tool for single-cell RNA sequencing. | 971 | |
| A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation. | 925 | |
| Spatiotemporal modeling of spatial transcriptomics | 488 | |
| The Monod package fits CME models to sequencing data. | 375 | |
| Deep learning for single-cell transcript counts | 358 | |
| Multi-omic extension of single-cell RNA velocity | 317 | |
| NeuralEE: a GPU-accelerated elastic embedding dimensionality reduction method fo... | 299 | |
| compliance and testing tools for rnaget | 271 | |
| scRNA-Seq analysis tools that scale to millions of cells | 251 | |
| Reproducible boilerplate-free workflow management for Scanpy-based scRNA-seq ana... | 178 | |
| 🍊🔬 Orange add-on for gene expression of single cell data | 174 | |
| MultiNeuronChat is a Python library for inferring condition‑related changes in s... | 152 | |
| A cross-platform toolkit for building RNA velocity-ready spliced/unspliced matri... | 149 | |
| Semantic mapper for Loom file metadata. | 142 | |
| Implementation of GA4GH rnaget API | 127 | |
| single cell VR preprocess | 85 | |
| TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Com... | 71 | |
| Dynamical systems methods for RNA velocity analysis | 64 | |
| EpiOne: Generative cartography of single-cell epigenomes | 63 |
