30 dependents
| Package | Description | Downloads/month |
|---|---|---|
| A short tandem repeat (STR) genotyping and analysis toolkit for long reads | 6K | |
| Utilities for analysis of adaptive immune receptor repertoire (AIRR) data | 5K | |
| VDJ assignment and antibody sequence annotation. Scalable from a single sequence... | 4K | |
| flexible CDR based distance metrics | 3K | |
| Protein Complexes and Homo Oligomeric Interfaces Resolver | 2K | |
| Functional ANnoTAtion based on embedding space SImilArity | 1K | |
| 999 | ||
| Python scripts for dealing with protein structure and pdb files | 971 | |
| A tool in order to accurately remove primer sequences from NGS reads in an ampli... | 952 | |
| Advanced RNA Cap Type Prediction Framework | 951 | |
| 930 | ||
| Reference-free clustering and consensus forming of long-read amplicon sequencing | 796 | |
| Simple Algorithm for Very Efficient Multiplexing of Oxford Nanopore Experiments ... | 774 | |
| SV detection tool for nanopore sequence reads | 685 | |
| modelarchive - Functionality around ModelArchive.org & ModelCIF. | 642 | |
| 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies | 604 | |
| RNA virus analysis toolkit | 492 | |
| Pham-based genome clustering | 488 | |
| a tool for designing primer panels for multiplex PCR. | 487 | |
| De novo construction of isoforms from long-read data | 457 | |
| Read-based variant phasing with methylation integration for long-read sequencing | 275 | |
| Jaeger is a quick and precise tool for detecting phages in sequence assemblies. | 228 | |
| Telomeric allele scoring tool for output from Telogator2. | 182 | |
| Oligopool Calculator - Automated design and analysis of oligo pool libraries | 165 | |
| A dual context-aware basecaller for nanopore direct RNA sequencing | 125 | |
| 117 | ||
| Oxford Nanopore Technologies duplex pipeline scripts for guppy | 108 | |
| EcDNA reconstruction from long-read nanopore data | 86 | |
| 64 | ||
| Telomeric allele scoring tool for output from Telogator2. | 60 |
