139 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Python package for graph statistics | 129K | |
| [Deprecated; use POT instead] Fast EMD for Python: a wrapper for Pele and Werman... | 31K | |
| TorchCFM: a Conditional Flow Matching library | 15K | |
| A tool facilitating matching for any dataset discovery method. Also, an extensib... | 14K | |
| Multiparameter Topological Persistence for Machine Learning | 14K | |
| fedimpute is a benchmarking tool for federated imputation | 4K | |
| A Topological Signal Processing Package | 3K | |
| A Python package using Gromov-Wasserstein distance to compare cell shapes | 2K | |
| EnrichMap: Spatially-informed enrichment analysis for functional interpretation ... | 2K | |
| A topological machine learning framework based on PyTorch | 2K | |
| Integrating transcriptional data to decipher the tumor microenvironment with the... | 2K | |
| A deep-learning based multi-omics bulk sequencing data integration suite with a ... | 2K | |
| A toolkit of spatial transcriptomic analysis. | 2K | |
| 2K | ||
| STACCI for STCase | 2K | |
| Live-cell imaging cell-state trajectory embedding | 1K | |
| Detection of PatIent-Level distances from single cell genomics and pathomics dat... | 1K | |
| soak: graph-based pipelines and tools for LLM-assisted qualitative text analysis | 1K | |
| Standalone library for evaluating activity sequences | 989 | |
| A simple data/model commons package for POWDER experiments | 963 | |
| REVISE is a Python toolkit for reconstruct and analyse spatial transcriptomics (... | 962 | |
| Python package to detect and analyse collective phenomena | 924 | |
| BioNeMo Modular Co-Design: Making building Diffusion and Flow Matching generativ... | 902 | |
| ArbitrageLab is a collection of algorithms from the best academic journals and g... | 896 | |
| Python package for spatial transcriptomics data analysis | 885 | |
| A framework to easily train deep learning model on Imaging Atmospheric Cherenkov... | 873 | |
| Framework for benchmarking optimal transport methods on both synthetic and real ... | 851 | |
| A python library for social event detection | 793 | |
| Accelerated CellStitch for 3D labeling of anisotropic image stacks | 774 | |
| A collection of losses and metrics for topology-preserving image segmentation. | 733 | |
| Supervised OT with Global Ground Metric Learning | 694 | |
| LangSpace: Probing Large Language VAEs made simple | 612 | |
| MIOFlow is a Python package for modeling and analyzing single-cell RNA-seq data ... | 603 | |
| 597 | ||
| single cell trajectory inference framework based on Entropic Gaussian mixture Op... | 587 | |
| pip install rastereasy | 580 | |
| Package for analyzing event mass distributions and automating the search for new... | 561 | |
| Perform optimal transition coupling (OTC) in python. | 546 | |
| Python Library for 3D Quantitative Geometry in Computation Microscopy | 529 | |
| A SDK for tumour study | 497 | |
| Official library for xai-cola (COLA) | 490 | |
| Spatiotemporal modeling of spatial transcriptomics | 488 | |
| 485 | ||
| Compute gene trajectories | 481 | |
| Unified dimensionality reduction and neural network analysis framework | 477 | |
| GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial System... | 475 | |
| De novo spatial reconstruction of single-cell gene expression. | 472 | |
| Library for comparison of Optimal Transport algorithms | 464 | |
| UniHarmoniy, a Python library that implement several harmonization methods, and ... | 438 | |
| pymdma | 437 |
