72 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Supervisely SDK for Python - convenient way to automate, customize and extend Su... | 597K | |
| IBL libraries | 33K | |
| IBL atlas module | 24K | |
| code for reading and processing Allen Institute for Brain Science data | 13K | |
| Neuron geometry library for swc format. | 8K | |
| Voxcell is a small library to handle probability distributions that have a spati... | 6K | |
| Package to support the research of LIOM. | 4K | |
| automatic update on release for pip and docker image | 3K | |
| A wrapper for loading medical 2D, 3D, and 4D image volumes via multiple backends... | 3K | |
| Python library for analysis of neuroanatomical data. | 3K | |
| Python library for brain-wide quantification and spatial analysis. | 3K | |
| MONAI Label is an intelligent open source image labeling and learning tool. | 3K | |
| MONAI Label is an intelligent open source image labeling and learning tool. | 3K | |
| Load image files -> numpy arrays / Save numpy arrays -> image files / Draw simpl... | 3K | |
| Torso Processing ToolBox | 3K | |
| Shape Analysis Explainability And Interpretability | 2K | |
| Image registration using pytorch | 2K | |
| [Nature Machine Intelligence 2024] Code and evaluation repository for the paper | 2K | |
| See Beyond the Visible: The Magic of Hyperspectral Imaging | 2K | |
| Tools for distributed alignment of massive images | 1K | |
| Scripts and useful functions to plan neuroscience experiments using structural M... | 1K | |
| Loading and saving of image data. | 1K | |
| Utilities for reading and writing files created by 3D Slicer | 1K | |
| Loading and saving of brain imaging data. | 1K | |
| A Python-based GUI for Histological E-data Registration in Brain Space | 1K | |
| A Catalyst for Machine Learning in Fluoroscopy-guided Procedures. | 944 | |
| Brain Modeling Toolkit | 906 | |
| The Simulation and Image Processing for Photonics and Acoustics (SIMPA) toolkit. | 881 | |
| Edge Image Process | 834 | |
| Compose chunk operators to create a pipeline for local or distributed petabyte-s... | 636 | |
| A unified Python toolkit for managing, processing, and analyzing 2D and 3D visio... | 634 | |
| Grand Challenge TDSC ABUS 2023 dataset for pytorch | 593 | |
| Analysis and visualization of molecular structures and 3D microscopy | 569 | |
| TibblingAI Codebase | 568 | |
| MultiCellPose: segmentation and analysis toolkit for multimodal microscopy | 542 | |
| Python Library for 3D Quantitative Geometry in Computation Microscopy | 529 | |
| PySERA – Open-Source Standardized Python Library for Automated, Scalable, and Re... | 525 | |
| 501 | ||
| Generate radiation-dose maps | 480 | |
| A napari plugin for segmentation using vision transformer features | 448 | |
| NRDP CLI | 447 | |
| Standardised Data Access Tool of IPASC | 376 | |
| A python package for processing 3d volumetric data to build meshes for the Sand ... | 360 | |
| 352 | ||
| A ChRIS DS plugin that can train a 3D spleen segmentation model based off Projec... | 345 | |
| ITKIT: Feasible Medical Image Operation based on SimpleITK API | 343 | |
| A package to synthesize artificial axons | 342 | |
| GPU-based 3D non-rigid volumetric registration | 340 | |
| Medical image segmentation evaluation CLI | 338 | |
| Simplify and accelerate code optimization for medical research. | 334 |
