64 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Various genomics tools and scripts used in the GHFC lab | 278K | |
| Dataloader for applying sequence models to personalized genomics | 24K | |
| SigProfilerTopography allows evaluating the effect of chromatin organization, hi... | 17K | |
| 11K | ||
| Frequently used commands in bioinformatics | 7K | |
| Python packaging for CPTAC data | 4K | |
| Add your description here | 4K | |
| Validation and processing of GENIE files | 4K | |
| A simple tool to calculate metrics from a BAM file and filter references with un... | 3K | |
| Transformers for Transcripts | 2K | |
| Python toolkit for parsing, processing, and analysis of Illumina methylation ar... | 2K | |
| Comprehensive Reconstruction Algorithm for ME-models (coralME) | 2K | |
| MODAS: Multi-Omics Data Association Study toolkit | 2K | |
| Compare ATAC-seq data to loci. | 1K | |
| BioCRE package | 1K | |
| sequence | 1K | |
| Genomic allele frequency query engine with bitmap-encoded genotypes | 1K | |
| Ultraperformant ChIP-Seq broad peak/domain finder. | 1K | |
| Analyze haplotypes from Illumina paired-end amplicon sequencing | 975 | |
| Integrating GWAS and spatial transcriptomics for spatially resolved mapping of c... | 914 | |
| Integrating GWAS and spatial transcriptomics for spatially resolved mapping of c... | 903 | |
| Analysis tool for NG-Capture-C, Tri-C and Tiled-C data | 869 | |
| Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun... | 853 | |
| Leaflet is a probabilistic model that identifies latent cell states defined by s... | 698 | |
| Partial reimplementation of bcftools for VCF Zarr | 672 | |
| Data preprocessing for bolero package | 648 | |
| A collection of objects and functions to work with calling cards sequencing tool... | 629 | |
| Package to evaluate gene regulatory networks (GRNs). | 542 | |
| Annotated sequence data | 469 | |
| Multidimensional data visualization for genomics | 417 | |
| Statistical analysis, clustering and visualinzing scientific data with hassle fr... | 394 | |
| Epigenetics Utilities from the Downing Lab | 372 | |
| A package for single cell ATAC-seq analysis | 363 | |
| An interacitve python interface for inspection of somatic mutations | 322 | |
| TICHR: A computational tool designed to investigate transcriptional regulation | 313 | |
| 308 | ||
| detection of rings on acrocentric chromosomes using short reads sequencing | 295 | |
| Python wrapper of MALLET for LDA analysis on single-cell data | 279 | |
| An in silico perturbation framework to interpret large-scale genomic deep learni... | 259 | |
| Package allowing to annotate piRNAs clusters from RNA-seq datafiles | 220 | |
| Motif representation and analysis toolkit | 197 | |
| A package to create and manage genome-related TileDB arrays | 190 | |
| 186 | ||
| A python-based transcriptomics library | 182 | |
| DXT Explorer is an interactive web-based log analysis tool to visualize Darshan ... | 176 | |
| LiquidSig - cfRNA Deconvolution | 170 | |
| A collection of SBM utility functions | 170 | |
| A Python library that represents different entities in a cell | 169 | |
| 🧬Genomes to proteins, multi-level visualization library | 150 | |
| Demographic inference from the distribution of pairwise segregating sites | 148 |
