62 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Antibody numbering software | 11K | |
| Strain Genome Explorer: a tool suite for tracking and characterizing low-abundan... | 5K | |
| A novel tool for linking peptide with taxonomic and functional information with ... | 4K | |
| A Python library for the interpolation of aquatic biogeochemical datasets using ... | 3K | |
| Hierarchical taxonomic classifier. | 1K | |
| 1K | ||
| Emperor | 1K | |
| 1K | ||
| A tool for metagenomic taxonomic profiling and abundance matrix generation | 1K | |
| Sparse Cooccurence Network Investigation for Compositional data | 919 | |
| TCRcloud is an Adaptive Immune Receptor Repertoire (AIRR) visualization and comp... | 896 | |
| InGenAnnot: Inspection of Gene Annotation | 895 | |
| A reporting tool for aggregating results from taxonomic classification analyses | 828 | |
| 747 | ||
| Robust Aitchison Tensor Decomposition for sparse count data | 732 | |
| Utility for computing k-mer-based statistics | 727 | |
| A python package for parsing, merging, and analyzing Kraken2 output files. | 692 | |
| Modular Amplicon Sequencing Analysis TOokit | 679 | |
| Repo for a package that generates UMI-gene dictionaries based on long reads, and... | 645 | |
| Python module handling calls to UMAP and HDBSCAN for Lorikeet and Rosella | 622 | |
| Utilities for metagoflow and marine omics demos | 614 | |
| metagenomic tool for noisy reads analyzing | 586 | |
| Automatic Gait Analysis in Python | 583 | |
| A user friendly package for designing parts for multiple gene deletions in Candi... | 581 | |
| A phylogenetic and geographic analysis tool | 562 | |
| A sketch-based surveillance platform | 528 | |
| Visualize differentially ranked features (taxa, metabolites, ...) and their log-... | 523 | |
| Command-line version of ellishape | 513 | |
| The Intelligent Bark Beetle Identifier (IBBI) is a Python package that provides ... | 487 | |
| High-level analysis package for (bio-)informatics | 486 | |
| Package for clustering sequences de novo and assignment to existing nomenclature | 461 | |
| A collection of scripts designed to process Kraken2 reports and convert them int... | 429 | |
| Robust Aitchison compositional biplots from sparse count data | 424 | |
| Add your description here | 411 | |
| Microbiome analysis | 353 | |
| Python package designed for the analysis of microbiota data when incorporating o... | 346 | |
| TArget pRioritization toolkit for perturbation Data In Spatial-omics | 307 | |
| Integration of soil metagenomic data for correlation of microbial markers with p... | 306 | |
| Error suppression and variant calling pipeline for libraries prepared using barc... | 282 | |
| versatile k-mer counter and diversity estimator for database independent propert... | 277 | |
| A Python Implementation of pyTax4Fun2 for Functional Profiling and Redundancy An... | 254 | |
| Calculate allele frequencies from a sequence multialignment. | 238 | |
| Refining Openfold predictions with Crystallographic Likelihood Targets | 229 | |
| Bi-cross validation of NMF and signature generation and analysis | 216 | |
| An advanced neural network framework with interpretability, generalization, robu... | 214 | |
| Pipeline to analyse Deep Mutational Scanning (DMS) experiments in terms of Distr... | 205 | |
| 203 | ||
| A collection of analytical and semi-semianalytical solutions for hydrogeological... | 199 | |
| Spatial omics analysis tools for cell/gene clustering from a standard region | 192 | |
| Routines for the extraction of degenerate sites and calculation of numbe... | 190 |
