38 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Single-cell analysis in Python. Scales to >100M cells. | 815K | |
| Miscellaneous utility code used by scverse packages | 610K | |
| Multimodal Data (.h5mu) implementation for Python | 147K | |
| Python package to perform enrichment analysis from omics data. | 49K | |
| A user-friendly library that brings familiar DataFrame-style operations to AnnDa... | 39K | |
| LIANA+: an all-in-one framework for cell-cell communication | 28K | |
| CellRank: dynamics from multi-view single-cell data | 9K | |
| Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scve... | 2K | |
| The complete FlowSOM package known from R, now available in Python! | 2K | |
| Single-cell spatial omics analysis that makes you happy! | 1K | |
| Contrastive pre-training for technology-agnostic single-cell representations bey... | 1K | |
| Unsupervised Deep Disentangled Representation of Single-Cell Omics | 1K | |
| Human Cytokine Dictionary | 1K | |
| k-NN-based mapping of cells across representations to transfer labels, embedding... | 1K | |
| Robust and scalable single-cell signature scoring | 1K | |
| Quality Control downstream of alevin-fry / simpleaf | 1K | |
| Package for scAtlasTb utils functions | 1K | |
| Bayesian Principal Component Analysis in Python | 1K | |
| factor models for omics data | 927 | |
| anndata with trees | 854 | |
| Performing differential testing on pseudobulked single-cell data | 806 | |
| A GUI for (imaging) mass cyometry analysis predominantly based on the popular St... | 644 | |
| Single-cell differential expression | 586 | |
| Package to evaluate gene regulatory networks (GRNs). | 542 | |
| Transcription Factor Motif Instance Neighborhood Decomposition and Interpretatio... | 520 | |
| Convenient and user-friendly package to streamline common workflows in single-ce... | 404 | |
| Mingle algorithm and code | 382 | |
| Toolbox of the Human Neural Organoid Cell Atlas | 374 | |
| Run embedding comparisons for single-cell data | 369 | |
| Automatically annotate cell types, consistently across samples. | 360 | |
| MapQC - a metric for the evaluation of single-cell query-to-reference mappings | 315 | |
| Hyperparameter sweeps on SLURM clusters | 262 | |
| Package for PCA-based spatial domain identification in single-cell spatial trans... | 223 | |
| Search- and quantification-engine agnostic biological interpretation of proteomi... | 194 | |
| TF activity inference, reliability estimation, and perturbation prediction. | 147 | |
| Analysis toolkit for time-series natural language datasets | 143 | |
| single-cell latent diffusion model | 85 | |
| Dataframe-agnostic Zarr Storage powered by Narwhals | 63 |
