153 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Process Manager MVP — DB + pm CLI + Snakemake execution | 12K | |
| Command line interface to create new modules/pipelines or adding a new rule to a... | 6K | |
| Sequana: a set of Snakemake NGS pipelines | 6K | |
| Interactive quality assessment of genome assemblies | 5K | |
| ATACofthesnake | 3K | |
| plyze: floor PLan analYZEr | 3K | |
| Snakemake pipeline for selection analysis | 3K | |
| The omnibenchmark CLI | 2K | |
| A unified and user-friendly collection of pipelines for: ATAC-seq, ChIP-seq, CUT... | 2K | |
| GEB simulates the environment (e.g., hydrology, floods), the individual people, ... | 2K | |
| Unified PanDA Server and JEDI Package | 2K | |
| Snakemake + BIDS | 2K | |
| Lightcone command-line toolchain | 2K | |
| Tools which deal with multiple single cell measurements | 2K | |
| Access volcano monitoring data. | 2K | |
| Identifying methlyation motifs in nanopore data | 2K | |
| RNA-seq, QC and differential analysis pipeline | 2K | |
| 2K | ||
| MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis | 1K | |
| A tool that allows users to build and run highly configurable record linkage/ent... | 1K | |
| A comprehensive, opinionated plant metagenomics and variant calling pipeline in ... | 1K | |
| A Snakemake executor plugin for submitting jobs to a LSF cluster | 1K | |
| CETSA analysis and deep learning toolkit for binding curves, hit calling, and pr... | 1K | |
| Phage workflow | 1K | |
| Calcium Imaging Pipeline Tool | 997 | |
| CLASV: Lassa virus lineage assignment based on random forest | 940 | |
| A multi-sample variant calling pipeline | 905 | |
| A unified PostgreSQL-based logging plugin and backend for Snakemake | 885 | |
| A machine learning approach for conducting genome wide association studies (GWAS... | 880 | |
| A complete pipeline for fitting and testing Fixed Local Clock (FLC) molecular cl... | 871 | |
| Analysis tool for NG-Capture-C, Tri-C and Tiled-C data | 869 | |
| 859 | ||
| Evolutionary Genome Topology — analysis toolkit for chromosome evolution across ... | 796 | |
| Python package for processing LEGEND simulations | 795 | |
| multiple taxonomic analysis using sequana_taxonomy standalone | 781 | |
| Språkbanken's text analysis tool | 773 | |
| Assembly-based variant discovery | 764 | |
| CLI tool for preparing data submission to Gene Expression Omnibus | 760 | |
| tools to support genome and metagenome analysis | 752 | |
| Bin Chicken - recovery of low abundance and taxonomically targeted metagenome as... | 741 | |
| Automated long-read first bacterial genome assembly tool implemented in Snakemak... | 734 | |
| Code repository for the HAYSTAC pipeline | 703 | |
| QC on various type of pacbio data | 702 | |
| Workflow to find ribosomal feature in set of FastQ files | 699 | |
| Search calcyanin in a set of amino acid sequences | 695 | |
| pyANI-plus is an application and Python module for whole-genome classification o... | 664 | |
| SimPhyni: a tool for phylogenetic trait simulation and inference. | 652 | |
| down sample NGS data | 604 | |
| reverse complement a set of FastQ files | 588 | |
| hecatomb is a virome analysis pipeline for analysis of Illumina sequence data | 578 |
