48 dependents
Package Description Downloads/month
Orbax provides common checkpointing and persistence utilities for JAX users 11.1M
Flax is a neural network library for JAX that is designed for flexibility. 5.4M
238K
DANDI command line client to facilitate common operations 68K
Legible, Scalable, Reproducible Foundation Models with Named Tensors and Jax 34K
Python package for evaluating neuron segmentations in terms of the number of spl... 33K
Pax is a Jax-based machine learning framework for training large scale models. P... 29K
(EasyDel Former) is a utility library designed to simplify and enhance the devel... 24K
A tool for joining multiple, homogeneous tensorstore datasets using the N5 drive... 20K
Gaussian processes in JAX and Equinox. 13K
Python API and CLI tools for working with WEBKNOSSOS datasets, annotations and s... 13K
Matrix Determinant Toolkit (memdet) 12K
Python/Mojo interface for Google Gemma 4 8K
⚡ Flashbax: Accelerated Replay Buffers in JAX 7K
Type stubs for tensorstore 5K
SpecTrax is a JAX-native library for neural networks and graph learning, built f... 3K
Pyramid Generator For OMETiff 3K
Use bacpipe to streamline the process of generating embeddings and analysing you... 3K
A Python-based tool for parallelized conversion of image datasets from various f... 3K
Unified tool for mesh generation, multiresolution mesh creation, skeletonization... 2K
SWiFT-IR: Signal Whitening Fourier Transform Image Registration 2K
Code to perform analysis on segmentations like those produced by CellMap 2K
NeMo Export and Deploy - a library to export and deploy LLMs and MMs 1K
An open-source Python toolkit for large-scale fluorescence microscopy data align... 1K
Scalable PyTorch data loaders for OME-NGFF zarr datasets 1K
Convert scientific image formats (TIFF, MRC, N5) to OME-Zarr 1K
This is the python wrapper for vcell modeling and simulation 1K
A multiscale cellular architecture visualization toolkit. 952
Active learning tools for fine-tuning ML models 748
Tools for preparing and working with neuroglancer scenes 666
Light microscopy simulation in python 563
559
Wikidata and Wiktionary language data extraction 546
Convert stacks of images to OME-Zarr 527
Spark: Modular Spiking Neural Networks 501
Segmentation for Axonal Connectomics 410
A python library for stitching & alignment of connectome datasets using finite-e... 390
Realtime prediction using neuroglancer 344
BEASTsim (BEnchmarking and Analysis of Spatial Transcriptomics simulations) is a... 287
Tools for converting OME-Zarr data within the ome2024-ngff-challenge (see https:... 270
AXLearn 268
Add your description here 260
Anndata Tensorstore Extension: Save and Load anndata to/from Tensorstore for ran... 255
An advanced neural network framework with interpretability, generalization, robu... 214
A command-line tool used to determine the tensorstore settings which yield the f... 135
Download slices from a neuroglancer view 117
MT3 Music Transcription Library 107
Save and Load anndata in chunked format for random access 69