50 dependents
| Package | Description | Downloads/month |
|---|---|---|
| A collection of helper for table handling and visualization | 9K | |
| Sequana: a set of Snakemake NGS pipelines | 6K | |
| ProteoBench is an open and collaborative platform for community-curated benchmar... | 6K | |
| multi-ancestry fine-mapping pipeline. | 4K | |
| A novel tool for linking peptide with taxonomic and functional information with ... | 4K | |
| Alethio Therapeutics Python Toolkit | 3K | |
| Analyze your RNA sequencing data without writing a single line of code | 3K | |
| REvolutionH-tl: Reconstruction of Evolutionary Histories tool | 2K | |
| Identifies the contribution of behavioural and stimulus parameters to neural act... | 2K | |
| mosaicMPI: mosaic multi-resolution program integration | 2K | |
| a collection of python scripts and functions for exploratory analysis of bioinfo... | 2K | |
| Generate a PanGenome given a set of genomes | 1K | |
| 🎨 Toolkit for generating publication-quality plots for Cell, Nature and Science ... | 1K | |
| Network clustering operations (for geophysical fluid transport) | 1K | |
| sourmash plugin for improved plotting/viz and cluster examination. | 954 | |
| Structural and site-specific Glycoproteomics Analysis Platform | 926 | |
| Utility functions for proteomics data analysis | 925 | |
| Facilitating the use of Deep Visual Proteomics | 912 | |
| InGenAnnot: Inspection of Gene Annotation | 895 | |
| GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle | 804 | |
| A tool for analyzing SSRs in genomic data | 769 | |
| A toolkit for subcellular analysis of spatial transcriptomics data | 741 | |
| Python package to query cancer variant databases | 679 | |
| Single cell and spatial proteomics data analysis | 656 | |
| A visualization and data exploration platform for Data-Independent Acquisition m... | 642 | |
| OmicScope: from quantitative proteomics to systems biology visualization | 636 | |
| Gene-centric functional enrichment analysis summarisation tool | 630 | |
| 562 | ||
| A Python package for perturbational single-cell data analysis | 556 | |
| End-to-end workflow for de novo protein sequencing based on InstaNovo | 529 | |
| A spatial CCC tool to infer ligand-receptor interaction | 510 | |
| The BASSA algorithm as presented in the paper Sparse Linear Bayesian Models for ... | 421 | |
| A Python package dedicated to identifying plant metabolite features related to i... | 415 | |
| a visualizer tool for plot generating | 413 | |
| IsoMarker | 412 | |
| A bioinforamtic package for investigating the evolution of CAZomes | 377 | |
| Probe set selection for targeted spatial transcriptomics. | 345 | |
| A python package that extends the Pandas API and allows us to work with multiple... | 340 | |
| Workflow for whole genome sequencing based phylogeny of Illumina and ONT data. | 312 | |
| Conformal prediction for machine learning classifiers | 227 | |
| DATAria utils | 157 | |
| A Python package for diagnostic assessment of data consistency in molecular data... | 148 | |
| A package to visualize single cell proteomics (and more to come!) data | 129 | |
| 118 | ||
| Custom modules for single cell analysis | 117 | |
| Lifton/Liftoff transcript filtering and comparison pipeline | 116 | |
| Flexible reverse engineering CLI tool for analyzing many files at once. | 107 | |
| Ensemble feature selection with bootstrapping, heterogeneous selectors, and stab... | 79 | |
| Python implementation of the SuperExactTest algorithm | 71 | |
| UpSet plots with upsetplot package, with added highlighting of sets for which ov... | 55 |
