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Dependencies
- aiofiles >=23.2.1
- anndata >=0.10.0
- asyncio-mqtt >=0.16.0
- babel >=2.13.0
- click >=8.1.0
- fastapi >=0.104.0
- fastmcp >=0.3.0
- filetype >=1.2.0
- gseapy >=1.1.0
- h5py >=3.10.0
- httpx >=0.25.0
- jsonschema >=4.20.0
- loguru >=0.7.0
- mcp >=1.0.0
- numpy <2.0,>=1.24.0
- openpyxl >=3.1.0
- pandas <2.2.0,>=2.1.0
- pathlib2 >=2.3.7
- psutil >=5.9.0
- pydantic >=2.5.0
- pydantic-settings >=2.1.0
- python-dateutil >=2.8.0
- python-i18n >=0.3.9
- pytz >=2023.3
- pyyaml >=6.0
- requests >=2.31.0
- rich >=13.7.0
- scanpy >=1.9.0
- scipy >=1.11.0
- tables >=3.9.0
- tqdm >=4.66.0
- typing-extensions >=4.8.0
- uvicorn >=0.24.0
- websockets >=12.0
23 optional dependencies
- biopython[annotation]
- bioservices[annotation]
- black[dev]
- celltypeagent[all]
- celltypist[annotation]
- dask[performance]
- diskcache[performance]
- docker[deploy]
- flake8[dev]
- gunicorn[deploy]
- joblib[performance]
- matplotlib[viz]
- mypy[dev]
- numba[ml]
- plotly[viz]
- pytest[dev]
- pytest-asyncio[dev]
- pytest-cov[dev]
- rpy2[annotation]
- ruff[dev]
- scikit-learn[ml]
- seaborn[viz]
- torch[ml]