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Dependencies
- anndata >=0.10
- biom-format >=2.1
- numpy >=1.24
- pandas >=2.0
- pyyaml >=6.0
- requests >=2.31
- scikit-learn >=1.3
- scipy >=1.11
- torch >=2.0
- tqdm >=4.65
- transformers >=4.30
11 optional dependencies
- black[dev]
- flake8[dev]
- gaia-soil[all]
- isort[dev]
- matplotlib[viz]
- mypy[dev]
- pytest[dev]
- pytest-cov[dev]
- seaborn[viz]
- umap-learn[viz]
- wandb[tracking]