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Dependencies
- biopython
- ipympl
- matplotlib
- networkx
- numpy <3,>=1.26.4
- pandas
- pyopengl
- requests
- scikit-learn
- scipy <2,>=1.13.1
- seaborn
- tqdm
35 optional dependencies
- accelerate[proaffinity]
- huggingface-hub[proaffinity]
- imageio[all]
- imageio[ovito-rendering]
- ionerdss[all]
- ipykernel[jupyter]
- ipykernel[all]
- ipywidgets[jupyter]
- ipywidgets[all]
- jupyter[all]
- jupyter[jupyter]
- jupyterlab[jupyter]
- jupyterlab[all]
- mdanalysis[simularium]
- mkdocs[all]
- mkdocs[docs]
- numpy[proaffinity]
- ovito[ovito-rendering]
- ovito[all]
- pillow[all]
- pillow[ovito-rendering]
- pytest[test]
- pytest[all]
- pytest-cov[test]
- pytest-cov[all]
- safetensors[proaffinity]
- scikit-learn[proaffinity]
- scipy[proaffinity]
- simulariumio[simularium]
- tokenizers[proaffinity]
- torch[proaffinity]
- torchaudio[proaffinity]
- torch-geometric[proaffinity]
- torchvision[proaffinity]
- transformers[proaffinity]