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Dependencies
- click
- docstring-parser
- h5py >=3.9.0
- hdmf >=4.1.1
- hdmf-zarr >=0.11
- jsonschema >=3.2.0
- numcodecs <0.16.0
- numpy >=1.22.0
- packaging
- pandas
- parse >=1.20.0
- psutil >=5.8.0
- pydantic >=2.0
- pynwb >=3.0.0
- pyyaml >=5.4
- referencing
- tqdm >=4.60.0
- typing-extensions >=4.1.0
99 optional dependencies
- av[sleap]
- boto3[aws]
- dandi[dandi]
- hdf5plugin[compressors]
- isx[inscopix]
- lxml[neuroscope]
- lxml[openephys]
- mearec[mearec]
- natsort[brukertiff]
- natsort[neuralynx]
- natsort[miniscope]
- natsort[suite2p]
- natsort[scanimage]
- ndx-dandi-icephys[abf]
- ndx-events[spikeglx]
- ndx-events[medpc]
- ndx-fiber-photometry[fiber-photometry]
- ndx-miniscope[behavior]
- ndx-miniscope[miniscope]
- ndx-pose[lightningpose]
- ndx-pose[sleap]
- ndx-pose[deeplabcut]
- ndx-sound[audio]
- neo[ecephys-minimal]
- neo[abf]
- neuroconv[suite2p]
- neuroconv[tdt]
- neuroconv[tdt-fp]
- neuroconv[text]
- neuroconv[thor]
- neuroconv[tiff]
- neuroconv[whitematter]
- neuroconv[spikegadgets]
- neuroconv[alphaomega]
- neuroconv[axon]
- neuroconv[axona]
- neuroconv[behavior]
- neuroconv[biocam]
- neuroconv[blackrock]
- neuroconv[brukertiff]
- neuroconv[caiman]
- neuroconv[cellexplorer]
- neuroconv[cnmfe]
- neuroconv[ecephys]
- neuroconv[edf]
- neuroconv[extract]
- neuroconv[femtonics]
- neuroconv[full]
- neuroconv[hdf5]
- neuroconv[hdf5imaging]
- neuroconv[icephys]
- neuroconv[inscopix]
- neuroconv[intan]
- neuroconv[kilosort]
- neuroconv[lightningpose]
- neuroconv[maxwell]
- neuroconv[mcsraw]
- neuroconv[mearec]
- neuroconv[micromanagertiff]
- neuroconv[minian]
- neuroconv[miniscope]
- neuroconv[neuralynx]
- neuroconv[neuroscope]
- neuroconv[openephys]
- neuroconv[ophys]
- neuroconv[phy]
- neuroconv[plexon]
- neuroconv[plexon2]
- neuroconv[sbx]
- neuroconv[scanbox]
- neuroconv[scanimage]
- neuroconv[scanimage-legacy]
- neuroconv[sima]
- neuroconv[spike2]
- neuroconv[spikeglx]
- opencv-python-headless[video]
- openpyxl[excel]
- pillow[image]
- probeinterface[spikeglx]
- pyedflib[edf]
- pymatreader[cellexplorer]
- roiextractors[ophys-minimal]
- scanimage-tiff-reader[scanimage-legacy]
- scipy[cnmfe]
- scipy[caiman]
- scipy[audio]
- setuptools[mearec]
- sleap-io[sleap]
- sonpy[spike2]
- spikeinterface[ecephys-minimal]
- tables[deeplabcut]
- tdt[tdt-fp]
- tifffile[scanimage]
- tifffile[thor]
- tifffile[tiff]
- tifffile[brukertiff]
- tifffile[micromanagertiff]
- xlrd[excel]
- zugbruecke[plexon2]