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Dependencies
- geopandas <2.0.0,>=1.0.1
- h5py <4.0.0,>=3.10.0
- matplotlib <4.0.0,>=3.8.3
- numpy <2.0.0,>=1.26.4
- opencv-python <5.0.0.0,>=4.8.1.78
- openslide-python <2.0.0,>=1.3.1
- pandas <3.0.0,>=2.2.1
- scipy <2.0.0,>=1.12.0
- shapely <3.0.0,>=2.0.3
- tiffslide <3.0.0,>=2.3.0
- typer <0.17.0,>=0.16.0
- uuid <2.0,>=1.30
12 optional dependencies
- cellpose[seg]
- dask[emb]
- huggingface-hub[emb]
- ipywidgets[seg]
- scikit-image[emb]
- scikit-learn[emb]
- timm[emb]
- torch[emb]
- torchvision[emb]
- tqdm[emb]
- transformers[emb]
- umap-learn[emb]