Histopathology Python Packages

tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

32K 526 109

torchstain

Stain normalization tools for histological analysis and computational pathology

30K 179 30

slideflow

Powerful, open-source AI tools for digital pathology.

2K 360 64

pathml

Tools for computational pathology

1K 451 89

openpatchminer

OpenSlide Patch Manager

1K 4 6

wholeslidedata

No description available

945 113 31

wsiprocess

Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks

465 25 3

prismtoolbox

Toolbox for histopathology image analysis

275 7 0

stainx

Enhanced stain normalization for histopathology images with batch processing support. Optimized for CPU, GPU (CUDA), and MPS (Apple Silicon) devices.

172 6 0

aestetik

AESTETIK: Convolutional autoencoder for learning spot representations from spatial transcriptomics and morphology data

165 23 5

deeperhistreg

DeeperHistReg Framework - To Register WSI Images

146 96 18

moozy

MOOZY: A Patient-First Foundation Model for Computational Pathology.

132 14 0

harpipe

Histological Artifact Restoration Pipeline

105 9 0

wsinfer-mil

CLI tool to run specimen-level inference on whole slide images

102 7 1

spinpath

Run specimen-level inference on whole slide images.

63 7 1

torchunmix

Automatic stain unmixing and augmentation for histopathology images in PyTorch

30 0 1

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