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Dependencies
- anndata
- chex
- igraph >0.9.0
- jax
- jaxlib
- matplotlib
- numpy
- pandas
- plottable
- pynndescent
- rich
- scanpy >=1.9
- scikit-learn
- scipy
- tqdm
- umap-learn >=0.5.0
32 optional dependencies
- adjusttext[tutorial]
- black[test]
- coverage[test]
- flake8[test]
- goatools[tutorial]
- harmonypy[test]
- harmony-pytorch[tutorial]
- ipykernel[doc]
- ipython[doc]
- joblib[parallel]
- joblib[test]
- mygene[tutorial]
- myst-nb[doc]
- numba[doc]
- numba[test]
- numexpr[tutorial]
- plotnine[tutorial]
- pre-commit[dev]
- pybtex-docutils[doc]
- pyliger[tutorial]
- pytest[test]
- rich[tutorial]
- scanorama[tutorial]
- scanpydoc[doc]
- scib[test]
- scvi-tools[tutorial]
- sphinx[doc]
- sphinx-book-theme[doc]
- sphinxcontrib-bibtex[doc]
- sphinx-copybutton[doc]
- sphinxext-opengraph[doc]
- twine[dev]