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GuyTeichman
rnalysis

Analyze your RNA sequencing data without writing a single line of code

3K 141 13
algbio
flowpaths

A Python package to quickly decompose weighted graphs (acyclic or not) into weighted paths or walks, under various models.

2K 13 6
BU-ISCIII
buisciii-tools

Tools for managing and resolution of buisciii services.

1K 3 19
bobeobibo
phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

1K 52 15
DEIB-GECO
gmql

Python Library for data analysis based on GMQL

621 15 5
SouradiptoC
codonu

A python project for analysis of codon usage for gene or genome analysis

541 25 1
dohlee
dohlee

:package: My personal python utility library.

419 1 0
dicaso
bidali

Biological Data Analysis Library

358 0 1
pierrepo
pbxplore

A suite of tools to explore protein structures with Protein Blocks :snake:

308 30 15
onedimkurt
tcga-gdc-downloader

User-friendly tool to download TCGA STAR RNA-seq counts from the GDC portal

276 7 0
ScialdoneLab
ciara-python

Implementation of entropy of mixing algorithm in python

247 10 1
urmi-21
pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

247 86 29
kescobo
kvasirhgt

A package to identify HGT in bacterial genomes

228 10 5
mbhall88
pistis

Quality control plotting for long reads

204 10 1
bhi-kimlab
neticspy

Python implementation of NetICS. (Network-based Integration of Multi-omics data).

198 1 1
nilesh-tawari
chronqc

Manuscript describing ChronQC is now available online in Bioinformatics

178 18 10
SouthGreenPlatform
pyrice

PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a smart query system which fits the computing resources to optimize the query speed.

152 13 2
PedroMTQ
unifunc

Tool for similarity analysis of protein function annotations.

105 8 0
BIIG-UC3M
pmoss

Python package to model the p-value as an n-dependent function using Monte Carlo cross-validation.

105 16 5
jithin8mathew
discere

Python code to extract features from Protein sequences for Machine Learning/Deep Learning

81 20 2
nalomran
pyreqtl

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

67 10 0
matt-sd-watson
umiread

Lightweight utility for 10x single cell assays

61 3 0
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