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rosettapy

A Python utility for wrapping Rosetta command line tools.

bioat

bioat, a python package & command line toolkit for Bioinformatics and data science!

easyfasta

A lightweight Python library for efficient FASTA file parsing and DNA sequence manipulation.

finaletoolkit

FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.

rnalysis

Analyze your RNA sequencing data without writing a single line of code

hide-deconv

Repository for ECCB 2026 Poster Submission. Will be made available for reviewing after submission. For earlier access contact Dennis.k.volkl@uib.no

tidytcells

Standardise TR/MH/IG data

rosetta-finder

A Python utility for wrapping Rosetta command line tools.

ampidentifier

A Python toolkit for Antimicrobial Peptide (AMP) prediction using ensemble machine learning

binette

A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.

pacs-q

PaCS-Q is a Python toolkit designed to assist with Parallel Cascade Selection simulations (PaCS) for studying protein structural transitions in MD and QM/MM MD level.

biobase

A home for all biological/bioinformatics constants from protein strings to BLOSUM matrices.

phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

genomap

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

gsmap

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

gps-mapping

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

squarna

RNA secondary structure prediction tool

stitchr

Stitch together coding TCR sequences from V/J/CDR3 information

nflaunch

nflaunch is a command-line tool to simplify launching Nextflow pipelines on cloud batch services (GCP Batch)

geneview

Genomics data visualization in Python by using matplotlib.

mnnpy

Mutual nearest neighbors correction in python.

wlabkit

🧬 This is a toolkit to handle bio-data from WeiBin Lab

gmql

Python Library for data analysis based on GMQL

genegrouper

CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.