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nipreps
smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

10K 163 46
InsightSoftwareConsortium
itk-tubetk

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

8K 55 59
voxelmorph
voxelmorph

Unsupervised Learning for Image Registration

7K 3K 633
MBPhys
gryds

Gryds: a Python package for geometric transformations of images

6K 2 0
multiview-stitcher
multiview-stitcher

Registration and fusion of large imaging datasets in 2D and 3D.

5K 111 15
gmberton
vismatch

Wrapper of 50+ image matching models with a unified interface

4K 838 75
lucalista
shinestacker

Focus stacking software with an interactive GUI and Python API for advanced image processing workflows

3K 109 7
uncbiag
icon-registration

A library for performing image registration using deep learning, regularized by inverse consistency

3K 61 15
InsightSoftwareConsortium
itk-twoprojectionregistration

ITK-Based Implementation of Two-Projection 2D/3D Registration Method with an Application in Patient Setup for External Beam Radiotherapy

2K 55 18
nipreps
smriprep-docker

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

1K 163 46
WeiXuanChan
motionsegmentation

Motion correction, explicit spatio-temporal regularization of motion tracking, random speckles enhancement, and segmentation.

1K 8 2
jcpassieux
pyxel-dic

Python FE-DIC library

1K 46 17
BioMedIA
hf-deepali

Image, point set, and surface registration library for PyTorch.

1K 36 9
InsightSoftwareConsortium
itk-ndreg

This is the Neurodata open-source Python package that performs affine and deformable (LDDMM) image registration.

896 5 2
cgohlke
imreg

FFT based image registration

803 47 7
gmberton
image-matching-models

Wrapper of 50+ image matching models with a unified interface

665 838 75
multiview-stitcher
napari-stitcher

A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher

636 18 5
AMYPAD
spm12

Python wrapper around MATLAB and SPM12

612 10 3
nagonzalezf
starsalign

A package for aligning and comparing astronomical images

502 4 1
jacobhinkle
lagomorph

Image Registration and Computational Anatomy in PyTorch

271 21 5
sanderslab
magellanmapper

MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification

265 22 4
BlueBrain
atlalign

Blue Brain multi-modal registration and alignment toolbox

244 12 4
rfonod
stabilo

🌀 Stabilo is a Python package for stabilizing video frames or object trajectories using advanced transformation techniques. It supports user-defined masks to exclude specific areas, making it ideal for dynamic scenes with moving objects. Unlike traditional stabilization, it stabilizes content relative to a chosen reference frame.

240 24 5
phisanti
templatematchingpy

Python implementation of the Template Matching plugin from Fiji/ImageJ

187 3 0
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