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Dependencies
- appdirs
- bg-atlasapi
- brainglobe-atlasapi
- dataclasses
- imagecodecs
- importlib-metadata >=1.0
- matplotlib !=3.3.0,!=3.3.1
- pandas
- pyyaml
- scikit-image
- tifffile
- typing-extensions
28 optional dependencies
- awscli[aws]
- bash-kernel[jupyter]
- boto3[aws]
- furo[docs]
- itk-elastix[itk]
- javabridge[import]
- jinja2[pandas-plus]
- jupyterlab[jupyter]
- magellanmapper[all]
- magellanmapper[most]
- matplotlib-scalebar[all]
- matplotlib-scalebar[most]
- mayavi[3d]
- myst-parser[docs]
- openpyxl[pandas-plus]
- pyamg[all]
- pyamg[most]
- pyface[gui]
- pyqt5[gui]
- python-bioformats[import]
- scikit-learn[all]
- seaborn[all]
- simpleitk[simplitk]
- sphinx[docs]
- sphinx-autodoc-typehints[docs]
- tensorflow[classifier]
- traitsui[gui]
- vtk[3d]