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Bioinformatics Analysis Python Packages

Python packages with the GitHub topic bioinformatics-analysis. Sorted by relevance, with stars and monthly downloads.
GuyTeichman
rnalysis

Analyze your RNA sequencing data without writing a single line of code

3K 141 13
algbio
flowpaths

A Python package to quickly decompose weighted graphs (acyclic or not) into weighted paths or walks, under various models.

2K 13 6
BU-ISCIII
buisciii-tools

Tools for managing and resolution of buisciii services.

1K 3 19
bobeobibo
phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

1K 52 15
DEIB-GECO
gmql

Python Library for data analysis based on GMQL

606 15 5
SouradiptoC
codonu

A python project for analysis of codon usage for gene or genome analysis

515 25 1
dohlee
dohlee

:package: My personal python utility library.

423 1 0
dicaso
bidali

Biological Data Analysis Library

362 0 1
pierrepo
pbxplore

A suite of tools to explore protein structures with Protein Blocks :snake:

292 30 15
ScialdoneLab
ciara-python

Implementation of entropy of mixing algorithm in python

283 10 1
onedimkurt
tcga-gdc-downloader

User-friendly tool to download TCGA STAR RNA-seq counts from the GDC portal

281 7 0
urmi-21
pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

272 86 29
kescobo
kvasirhgt

A package to identify HGT in bacterial genomes

226 10 5
bhi-kimlab
neticspy

Python implementation of NetICS. (Network-based Integration of Multi-omics data).

215 1 1
mbhall88
pistis

Quality control plotting for long reads

196 10 1
nilesh-tawari
chronqc

Manuscript describing ChronQC is now available online in Bioinformatics

190 18 10
SouthGreenPlatform
pyrice

PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a smart query system which fits the computing resources to optimize the query speed.

164 13 2
PedroMTQ
unifunc

Tool for similarity analysis of protein function annotations.

111 8 0
BIIG-UC3M
pmoss

Python package to model the p-value as an n-dependent function using Monte Carlo cross-validation.

100 16 5
jithin8mathew
discere

Python code to extract features from Protein sequences for Machine Learning/Deep Learning

88 20 2
nalomran
pyreqtl

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

70 10 0
matt-sd-watson
umiread

Lightweight utility for 10x single cell assays

68 3 0
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