Image Registration Python Packages

smriprep

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

itk-tubetk

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

voxelmorph

Unsupervised Learning for Image Registration

gryds

Gryds: a Python package for geometric transformations of images

multiview-stitcher

Registration and fusion of large imaging datasets in 2D and 3D.

vismatch

Wrapper of 50+ image matching models with a unified interface

shinestacker

Focus stacking software with an interactive GUI and Python API for advanced image processing workflows

icon-registration

A library for performing image registration using deep learning, regularized by inverse consistency

itk-twoprojectionregistration

ITK-Based Implementation of Two-Projection 2D/3D Registration Method with an Application in Patient Setup for External Beam Radiotherapy

motionsegmentation

Motion correction, explicit spatio-temporal regularization of motion tracking, random speckles enhancement, and segmentation.

smriprep-docker

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

pyxel-dic

Python FE-DIC library

hf-deepali

Image, point set, and surface registration library for PyTorch.

itk-ndreg

This is the Neurodata open-source Python package that performs affine and deformable (LDDMM) image registration.

imreg

FFT based image registration

image-matching-models

Wrapper of 50+ image matching models with a unified interface

napari-stitcher

A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher

spm12

Python wrapper around MATLAB and SPM12

starsalign

A package for aligning and comparing astronomical images

lagomorph

Image Registration and Computational Anatomy in PyTorch

stabilo

🌀 Stabilo is a Python package for stabilizing video frames or object trajectories using advanced transformation techniques. It supports user-defined masks to exclude specific areas, making it ideal for dynamic scenes with moving objects. Unlike traditional stabilization, it stabilizes content relative to a chosen reference frame.

atlalign

Blue Brain multi-modal registration and alignment toolbox

magellanmapper

MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification

templatematchingpy

Python implementation of the Template Matching plugin from Fiji/ImageJ