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Omics Python Packages

Python packages with the GitHub topic omics. Sorted by relevance, with stars and monthly downloads.
Starlitnightly
omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

14K 972 126
DNAstack
dnastack-client-library

The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python

6K 0 0
the-omics-os
lobster-ai

The self-evolving agentic framework for bioinformatics

5K 26 6
the-omics-os
lobster-ai-tui

The self-evolving agentic framework for bioinformatics

4K 26 6
Starlitnightly
pyomic

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

2K 972 126
scDataset
scdataset

scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics

2K 45 2
saezlab
corneto

Unified knowledge-driven network inference from omics data

2K 100 9
the-omics-os
lobster-visualization

The self-evolving agentic framework for bioinformatics

1K 26 6
the-omics-os
lobster-research

The self-evolving agentic framework for bioinformatics

1K 26 6
the-omics-os
lobster-transcriptomics

The self-evolving agentic framework for bioinformatics

1K 26 6
the-omics-os
lobster-proteomics

The self-evolving agentic framework for bioinformatics

1K 26 6
the-omics-os
lobster-genomics

The self-evolving agentic framework for bioinformatics

1K 26 6
lucas-diedrich
bpca

Bayesian Principal Component Analysis in Python

1K 1 0
cwieder
sspa

Single sample pathway analysis tools for omics data

913 14 5
the-omics-os
lobster-metadata

Metadata assistant agent for Lobster AI - sample metadata and harmonization operations

907 26 6
Starlitnightly
omicclaw

omicverse agent skill

903 27 4
gmiaslab
pyiomica

PyIOmica (pyiomica) is a Python package for omics analyses.

900 16 3
shenwanxiang
aggmap

Jigsaw-like AggMap: A Robust and Explainable Omics Deep Learning Tool

879 39 7
the-omics-os
lobster-ml

Machine learning agents for Lobster AI (feature selection, survival analysis, interpretability)

861 26 6
Multiomics-Analytics-Group
vuecore

Python package for creating interactive and static visualizations of multi-omics data

830 4 0
the-omics-os
lobster-metabolomics

Metabolomics agent for Lobster AI (LC-MS, GC-MS, NMR untargeted metabolomics)

821 26 6
Multiomics-Analytics-Group
acore

A Python package with statistical functions to analyse multimodal molecular data

760 2 1
the-omics-os
lobster-structural-viz

Protein structure visualization agent for Lobster AI - 3D structural biology and PyMOL integration

748 26 6
fraenkel-lab
garnet

No description available

740 4 2
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