Omics Python Packages

omicverse

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

dnastack-client-library

The command line interface and client library for DNAstack services and GA4GH-compatible service, implemented in Python

lobster-ai

The self-evolving agentic framework for bioinformatics

lobster-ai-tui

The self-evolving agentic framework for bioinformatics

pyomic

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

scdataset

scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics

corneto

Unified knowledge-driven network inference from omics data

lobster-visualization

The self-evolving agentic framework for bioinformatics

lobster-research

The self-evolving agentic framework for bioinformatics

lobster-transcriptomics

The self-evolving agentic framework for bioinformatics

lobster-proteomics

The self-evolving agentic framework for bioinformatics

lobster-genomics

The self-evolving agentic framework for bioinformatics

bpca

Bayesian Principal Component Analysis in Python

sspa

Single sample pathway analysis tools for omics data

lobster-metadata

Metadata assistant agent for Lobster AI - sample metadata and harmonization operations

omicclaw

omicverse agent skill

pyiomica

PyIOmica (pyiomica) is a Python package for omics analyses.

aggmap

Jigsaw-like AggMap: A Robust and Explainable Omics Deep Learning Tool

lobster-ml

Machine learning agents for Lobster AI (feature selection, survival analysis, interpretability)

vuecore

Python package for creating interactive and static visualizations of multi-omics data

lobster-metabolomics

Metabolomics agent for Lobster AI (LC-MS, GC-MS, NMR untargeted metabolomics)

acore

A Python package with statistical functions to analyse multimodal molecular data

lobster-structural-viz

Protein structure visualization agent for Lobster AI - 3D structural biology and PyMOL integration

garnet

No description available