23 dependents
| Package | Description | Downloads/month |
|---|---|---|
| scikit-bio: a community-driven Python library for bioinformatics, providing vers... | 106K | |
| Meteor is a plateform for quantitative metagenomics profiling of complex ecosyst... | 3K | |
| The Microbial Co-occurrence Network Explorer | 2K | |
| GraftM is a pipeline used for identifying and classifying marker gene reads from... | 1K | |
| Taxontabletools2 - A comprehensive, platform-independent graphical user interfac... | 1K | |
| Sparse Cooccurence Network Investigation for Compositional data | 919 | |
| Annotation of Metabolite Origin via Networks: A tool for predicting putative met... | 737 | |
| Robust Aitchison Tensor Decomposition for sparse count data | 732 | |
| A Foundation Model for Soil Microbiome Understanding | 709 | |
| AMPtk: amplicon tool kit | 681 | |
| Modular Amplicon Sequencing Analysis TOokit | 679 | |
| versatile meta-omic data classifier | 542 | |
| Visualize differentially ranked features (taxa, metabolites, ...) and their log-... | 523 | |
| Robust Aitchison compositional biplots from sparse count data | 424 | |
| Add your description here | 411 | |
| Integration of soil metagenomic data for correlation of microbial markers with p... | 306 | |
| PSMPA: Prediction of Secondary Metabolism Potential using Amplicans | 215 | |
| An advanced neural network framework with interpretability, generalization, robu... | 214 | |
| Batch Effect Correction framework for metagenomic data | 115 | |
| Create BIOM-format tables (http://biom-format.org) from CLARK output (http://cl... | 75 | |
| PSMPA-Fungi: Prediction of Fungal Secondary Metabolism Potential using Amplicans | 64 | |
| Deep learning utilities for genomics | 63 | |
| Qiime2 plugin for THAPBI PICT. | 60 |
