379 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Fast, accurate and scalable probabilistic data linkage with support for multiple... | 718K | |
| Leiden is a general algorithm for methods of community detection in large networ... | 564K | |
| Python interface for igraph | 466K | |
| 447K | ||
| Python helpers for G4X. | 430K | |
| 🏝️ OASIS: Open Agent Social Interaction Simulations with One Million Agents. | 39K | |
| Accelerated, Python-only, single-cell integration benchmarking metrics | 22K | |
| Benchmarking analysis of data integration tools | 18K | |
| Extraction of 3D skeletons from meshes. | 18K | |
| exprmat: Routines for expression matrices | 15K | |
| A python library for multi omics included bulk, single cell and spatial RNA-seq ... | 14K | |
| Machine learning algorithms for many-body quantum systems | 13K | |
| Python package for hypergraph analysis and visualization. | 13K | |
| A high-performance topological machine learning toolbox in Python | 13K | |
| Python package for systematic assessment of clustering results stability on sing... | 11K | |
| Build and Search a knowledge base for your projects—bringing together code, PDFs... | 9K | |
| Network Development Suite | 9K | |
| FOSSLight Dependency Scanner | 8K | |
| Graph-powered code intelligence engine — indexes codebases into a knowledge grap... | 8K | |
| spatial networks impact assessment library 🐌 | 7K | |
| A lite implementation of tfmodisco, a motif discovery algorithm for genomics exp... | 7K | |
| Toolbox for Machine Learning using Topological Data Analysis. | 7K | |
| Single-cell epigenomics analysis tools | 7K | |
| A scanpy extension to analyse single-cell TCR and BCR data. | 6K | |
| Single cell trajectory detection | 6K | |
| RISK: a next-generation tool for biological network annotation and visualization | 6K | |
| AI Agents for drug discovery, drug development, and other pharmaceutical R&D. | 6K | |
| Topic modeling with contextual representations from sentence transformers. | 6K | |
| Technology-invariant pipeline for spatial omics analysis that scales to millions... | 6K | |
| Automated text analysis with networks | 5K | |
| Agent-first semantic grep — filesystem-native retrieval | 5K | |
| Evaluation metrics for single-cell perturbation predictions | 5K | |
| A toolkit for processing single cell Hi-C data | 5K | |
| Python utilities for Software Engineering + Machine Learning research. | 5K | |
| A tool for analyzing trascriptomes of millions of single cells. | 5K | |
| Opinionated, report-first CLI for single-cell and multi-omics analysis | 5K | |
| Unified Complex Network and Recurrence Analysis Toolbox | 5K | |
| ExplorerScript and SSBScript: Script languages for decompiled SSB (Pokémon Myste... | 4K | |
| Python library for calling Cytoscape Automation via CyREST | 4K | |
| GIS utility functions used in Statistics Norway. | 4K | |
| Single Cell Analysis Pipelines | 4K | |
| DBRetina Python Package | 4K | |
| Python tools for bipartite labor data | 4K | |
| The core library of the Napitsu project supporting the creation, transformation,... | 4K | |
| trajectory inference | 4K | |
| Mapping Vector Field of Single Cells | 4K | |
| Protein Embedding Model for Structure Search | 4K | |
| Semantic code chunker using Tree-sitter for intelligent code analysis | 4K | |
| Fork of code-review-graph with first-class Terraform support powered by treesitt... | 3K | |
| A novel machine learning pipeline to analyse spatial transcriptomics data | 3K |
